Table 2 Summary of the availability of cell line data in each platform
From: A large-scale comparative study of isoform expressions measured on four platforms
| Â | # of cell lines | # of genes | # of isoforms | Resource | Platform |
|---|---|---|---|---|---|
NanoString | 59 | 155 | 478 | Â | nCounter |
RNA-seq | 46 | transcriptome-wide | transcriptome-wide | CCLE | Illumina HiSeq 2000 |
Microarray gene expression | 46 | transcriptome-wide | transcriptome-wide | CCLE and GEO | HG-U133 Plus 2.0 Array |
Exon-array | 35 | transcriptome-wide | transcriptome-wide | GEO | Affy HuEx.1.0.st.v2 |
RT-qPCR | 13 | 4 | 8 | Â | Â |