Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp

BMC Genomics

Table 2 Number of predicted RiPPs (and subclasses) found by RippMiner

	*T. reesei*	*T. citirinoviride*	*T. harzianum*	*T. brevicompactum*
Query sequences	690	759	1099	518
Total predicted RiPPs	108	131	258	118
Cyanobactin	34	41	77	39
LanthipeptideB	10	7	18	4
LanthipeptideC	0	0	2	0
Lassopeptide	4	3	9	3
Linaridin	3	5	7	4
Microcin	1	5	5	0
Bacterial head to tail	0	0	1	2
Thiopeptide	1	0	0	0
Auto inducing peptide	0	1	0	0
NONE	54	69	140	66
After manual inspection	6	110	222	92

The protein sequences extracted from the predicted SM BGCs using antiSMASH ver. 4.3.0 (query sequences) were analyzed with the RiPPMiner software for T. reesei, T. citrinoviride, T. harzianum, and T. brevicompactum. False positives were removed via manual inspection

ISSN: 1471-2164