Fig. 8

Distribution of deleterious SNPs and Indels in six high-confidence effector genes met all the effector criteria. For each candidate gene, the upper sequence is the gene and the lower sequence shows the exons of the gene. The black lines represent the positions of the SNPs in the gene. For PS_11–281_00004726, the SNPs are in scaffold39: 403,585 (G > A), resulting in Ala > Val. For PS_11–281_00016865, the SNP is in scaffold374: 20,206 (G > A), resulting Val > Ile. For PS_11–281_00015631, the SNPs are in scaffold248: 61,377 (C > T), 61,383 (C > T), and 61,389 (G > A), resulting in Ser > Asn, Gly > Asp, and Ala > Val. For PS_11–281_00002472, the SNPs are in scaffold10: 453,870 (C > T) and 454,477 (C > T), resulting Ala > Val and Thr > Ile. For PS_11–281_00009923, the SNPs are in scaffold63: 143,096 (C > T) and 143,110 (G > A), resulting in Glu > Lys and Ser > Leu. The insertion is in scaffold63: 143,340 (T > TGCTG), resulting in frameshift of Asn. For PS_11–281_haploid_00011016, the SNPs are in scaffold530: 8, 893 (G > A), 8911 (G > A) and 8962 (C > T), resulting His> Tyr, Pro > Ser and Asp >Asn