Skip to main content

Table 1 Network topology

From: The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma

 

H. sapiens

S. cerevisiae

C. elegans

Hm_net

Protein (all)

17001

5883

3194

3474

Interactions (all)

276002

84277

5572

20684

Connected components

11

1

96

26

Proteins (LC)

16980

5883

2969

3408

Interactions (LC)

275991

84277

5442

20640

Proteome coverage (%)*

56.5

89.5

14.7

33.6

Largest hub*

TRIM25

NAB2

gei-4

Cullin 3

Clustering coefficient*

0.108

0.275

0.036

0.126

Diameter*

9

6

13

10

Characteristic path length*

3.082

2.483

4.802

3.837

Mean number of interactions*

32.508

28.651

3.666

12.113

  1. The network and topological statistics of the of Hm_net in comparison to single species networks. Topological statistics (*) are calculated for the largest component (LC) only
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us