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Table 2 Gene ontology (GO) terms indicating over-represented, up-regulated genes in hormone homeostasis at 12-h post-induction

From: Early transcriptome changes induced by the Geminivirus C4 oncoprotein: setting the stage for oncogenesis

GO terms

P-value*

FDR**

Fold enrichment

Genea symbol

Gene name (Gene ID)

Hormone biosynthesis

(GO:0042446)

8.25E-06

6.10E-03

13.02

ACS4

1-aminocyclopropane-1-carboxylate synthase 4 (AT2G22810)

ACS5

1-aminocyclopropane-1-carboxylate synthase 5 (AT5G65800)

ACS9

1-aminocyclopropane-1-carboxylate synthase 9 (AT3G49700)

GA2OX8

Gibberellin 2-oxidase (AT4G21200)

LOG5

Lysine decarboxylase protein 5 (AT4G35190)

MYB62

R2R3-MYB transcription family 62 (AT1G68320)

Regulation of hormone levels

(GO:0010817)

1.12E-05

7.37E-03

7.64

ACS4

1-aminocyclopropane-1-carboxylate synthase 4 (AT2G22810)

ACS5

1-aminocyclopropane-1-carboxylate synthase 5 (AT5G65800)

ACS9

1-aminocyclopropane-1-carboxylate synthase 9 (AT3G49700)

GA2OX8

Gibberellin 2-oxidase (AT4G21200)

LOG5

Lysine decarboxylase protein 5 (AT4G35190)

MYB62

R2R3-MYB transcription family 62 (AT1G68320)

RGF6

Root meristem growth factor 6 (AT4G16515)

RGF9

Root meristem growth factor 9 (AT5G64770)

Response to auxin

(GO:0009733)

6.97E-05

2.06E-02

7.01

ACS4

1-aminocyclopropane-1-carboxylate synthase 4 (AT2G22810)

IAA5

Indole − 3-acetic acid inducible 5 (AT1G15580)

SAUR9

Small auxin upregulated RNA 9 (AT4G36110)

SAUR10

Small auxin upregulated RNA 10 (AT2G18010)

SAUR15

Small auxin upregulated RNA 15 (AT4G38850)

SAUR27

Small auxin upregulated RNA 27 (AT3G03840)

XTH19

Xyloglucan endotransglucosylase/hydrolase protein 19 (AT4G30290)

Response to brassinosteroid

(GO:0009741)

1.51E-04

3.89E-02

15.54

ARL

ARGOS-like protein (AT2G44080)

BSK6

Brassinosteroid-signaling kinase 6 (AT3G54030)

PME41

Pectin methylesterase 41 (AT4G02330)

SAUR10

Small auxin upregulated RNA 10 (AT2G18010)

Response to salicylic acid

(GO:0009751)

1.87E-04

4.25E-02

9.71

ABCG40

ABC transporter G family member 40 (AT1G15520)

MYB62

R2R3-MYB transcription family 62 (AT1G68320)

PXMT1

Paraxanthine methyltransferase 1 (AT1G66700)

OPR1

12-oxophytodienoate reductase 1 (AT1G76680)

WRKY30

WRKY transcription factor 30 (AT5G24110)

Response to hormone

(GO:0009725)

9.26E-08

1.37E-04

4.37

ACS4

1-aminocyclopropane-1-carboxylate synthase 4 (AT2G22810)

ACS5

1-aminocyclopropane-1-carboxylate synthase 5 (AT5G65800)

ABCG40

ABC transporter G family member 40 (AT1G15520)

ARL

ARGOS-like protein (AT2G44080)

BSK6

Brassinosteroid-signaling kinase 6 (AT3G54030)

CRRSP38

Cysteine-rich repeat secretory protein 38 (AT3G22060)

ERF003

Ethylene-responsive transcription factor 003 (AT5G25190)

IAA5

Indole − 3-acetic acid inducible 5 (AT1G15580)

MYB62

R2R3-MYB transcription family 62 (AT1G68320)

OPR1

12-oxophytodienoate reductase 1 (AT1G76680)

PME41

Pectin methylesterase 41 (AT4G02330)

PXMT1

Paraxanthine methyltransferase 1 (AT1G66700)

SAUR9

Small auxin upregulated RNA 9 (AT4G36110)

SAUR10

Small auxin upregulated RNA 10 (AT2G18010)

SAUR15

Small auxin upregulated RNA 15 (AT4G38850)

SAUR27

Small auxin upregulated RNA 27 (AT3G03840)

WRKY30

WRKY transcription factor 30 (AT5G24110)

XTH19

Xyloglucan endotransglucosylase/hydrolase protein 19 (AT4G30290)

  1. *P-values < 0.05
  2. **FDR, false discovery rate, with P < 0.05
  3. aGene symbols in bold print indicate genes uniquely responsive to C4