Skip to main content

Table 5 Gene ontology enrichment analysis of down-regulated genes at 6- and 12-h post induction

From: Early transcriptome changes induced by the Geminivirus C4 oncoprotein: setting the stage for oncogenesis

GO terms

P-value*

FDR**

Fold enrichment

Gene symbola

Encoded protein name (Gene ID)

Down-regulated genes at 6 and 12 h post-induction

 Lipid transport

(GO:0006869, biological process)

2.80E-06

1.65E-02

92.45

AZI5

Lipid transfer protein (AT4G12510)

MQD22.2

Lipid transfer protein (AT5G46890)

EXTA

Lipid transfer protein (AT5G46900)

 Lipid binding

(GO:0008289, molecular function)

1.61E-05

4.95E-02

51.23

AZI5

Lipid transfer protein (AT4G12510)

MQD22.2

Lipid transfer protein (AT5G46890)

EXTA

Lipid transfer protein (AT5G46900)

Down-regulated genes at 12 h post-induction

 Trichoblast differentiation

(GO:0010054, biological process)

2.04E-06

1.21E-02

44.77

COBL9

Cobra-like protein 9 (AT5G49270)

LRX1

Leucine-rich repeat extension-like protein 1 (AT1G12040)

GT16

Xyloglucan-specific galacturonosyltransferase 1 (AT1G63450)

MRH6

Adenine nucleotide alpha hydrolases -like protein (AT2G03720)

 Cell development

(GO:0048468, biological process)

3.66E-06

7.21E-03

20.83

COBL9

Cobra-like protein 9 (AT5G49270)

LRX1

Leucine-rich repeat extensin-like protein 1 (AT1G12040)

NAS1

Nicotianamine synthase 1 (AT5G04950)

GT16

Xyloglucan-specific galacturonosyltransferase 1 (AT1G63450)

MRH6

Adenine nucleotide alpha hydrolases-like protein (AT2G03720)

 Plant-type cell wall

(GO:0009505: cellular component)

3.99E-07

4.33E-04

20.17

LRX1

Leucine-rich repeat extension-like protein 1 (AT1G12040)

PER1

Peroxidase 1 (AT1G05240)

PER2

Peroxidase 2 (AT1G05250)

PER24

Peroxidase 24 (AT2G39040)

PME24

Pectinesterase/pectinesterase inhibitor 24 (AT3G10710)

PME46

Pectinesterase/pectinesterase inhibitor 46 (AT5G04960)

  1. *P-values < 0.05
  2. **All FDR values have a P < 0.05. FDR, false discovery rate
  3. aGene symbols in bold print indicate genes uniquely responsive to C4