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Fig. 2 | BMC Genomics

Fig. 2

From: Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Fig. 2

Circular representation of the genome of C. psittaci strain 84/2334. Circles from the outside in show: the positions of protein-coding genes (blue), tRNA genes (orange) and rRNA genes (Pink) on the positive (circle 1) and negative (circle 2) strands, respectively. Circles 3–5 shows positions of BLAST hits determined through blastn comparisons of C. abortus S26/3 (circle 3), C. psittaci 6BC (circle 4) and C. psittaci GR9 (circle 5) with the following settings: query split size = 50,000 bp, query split overlap size = 0, expect value cut off = 0.00001. Low complexity sequences were eliminated from the analysis. The height of the shading in the BLAST results rings is proportional to the percent identity of the hit. Overlapping hits appear as darker shading. Circles 6 and 7 show plots of the GC content and GC skew plotted as the deviation from the average for the entire sequence. The origin of replication is indicated by the vertical dashed line. The four Pmp loci, PZ region and TMH loci are highlighted using rectangular boxes. The figure was generated using the program CGView

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