Table 1 Detailed information of VviBBX gene family members in grapevine
Gene ID | VCost.v3 ID | CRIBI v2.1 ID | Locus ID | Accession no. | CDS (bp) | Protein (aa) | Position | MWÂ (Da) | pI | Domains | Structural group | Subcellular localization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
VviBBX2 | Vitvi14g01296.t01 | VIT_214s0083g00640.1 | GSVIVT01036499001 | XP_002282509.1 | 1176 | 391 | chr14: 22695952–22698379 (+) | 42699.57 | 5.77 | 2BBOX + CCT + VP motif | I | Nuclear |
VviBBX5 | Vitvi04g00665.t01 | VIT_204s0008g07340.1 | GSVIVT01036037001 | XP_002263458.1 | 1044 | 347 | chr4: 7669506–7671340 (−) | 38001.35 | 6.24 | 2BBOX + CCT + VP motif | I | Nuclear |
VviBBX6 | Vitvi11g01309.t01 | VIT_211s0052g01800.1 | GSVIVT01029107001 | XP_002277953.1 | 1086 | 361 | chr11: 19920787–19922322 (+) | 38993.62 | 6.75 | 2BBOX + CCT + VP motif | I | Nuclear |
VviBBX7 | Vitvi12g00757.t01 | VIT_212s0057g01350.1 | GSVIVT01030127001 | XP_002264506.2 | 1248 | 415 | chr12: 9692684–9699362 (−) | 44982.85 | 4.76 | 2BBOX + CCT | II | Nuclear |
VviBBX8 | Vitvi10g00219.t01 | VIT_200s0194g00070.1 | GSVIVT01003473001 | XP_002265377.2 | 1245 | 414 | chr10: 2260168–2272241 (+) | 45041.34 | 5.14 | 2BBOX + CCT | II | Nuclear |
VviBBX9 | Vitvi19g00408.t01 | VIT_219s0014g05120.1 | GSVIVT01014591001 | XP_010644324.1 | 1113 | 370 | chr19: 5406770–5409091 (−) | 41137.3 | 6.33 | 2BBOX + CCT | II | Nuclear |
VviBBX10 | Vitvi12g00542.t01 | VIT_212s0059g02500.1 | GSVIVT01030628001 | XP_019078853.1 | 1305 | 434 | chr12: 7291808-7293953 (+) | 47040.03 | 7.68 | 2BBOX + CCT | II | Nuclear/Extracellular |
VviBBX11 | Vitvi07g00252.t01 | VIT_207s0104g01360.1 | GSVIVT01010991001 | XP_002268490.1 | 1185 | 394 | chr7: 2762240–2765564 (−) | 43918.32 | 6.22 | 2BBOX + CCT | II | Nuclear |
VviBBX12a | Vitvi01g01729.t01 | VIT_201s0146g00360.1 | GSVIVT01000951001 | XP_002263613.1 | 1410 | 469 | chr1: 23236072–23239673 (−) | 50856.79 | 5.89 | 2BBOX + CCT | II | Nuclear |
VviBBX12b | Vitvi14g01487.t01 | VIT_214s0068g01380.1 | GSVIVT01033017001 | XP_010660698.1 | 1350 | 449 | chr14: 25084927–25088384 (+) | 49441.06 | 6.09 | 2BBOX + CCT | II | Nuclear |
VviBBX15a | Vitvi01g00288.t01 | VIT_201s0011g03520.1 | GSVIVT01011897001 | XP_002282578.1 | 1299 | 432 | chr1: 3190849–3193178 (−) | 47784.66 | 5.40 | 1BBOX + CCT | III | Nuclear |
VviBBX15b | Vitvi17g00328.t01 | – | – | XP_002276181.1 | 1233 | 410 | chr17: 3813174–3815238 (−) | 45929.41 | 5.29 | 1BBOX + CCT | III | Nuclear/Cytoplasmic |
VviBBX19a | Vitvi03g00049.t01 | VIT_203s0038g00690.1 | GSVIVT01024173001 | XP_002267957.1 | 633 | 210 | chr3: 594823–598603 (−) | 23371.44 | 6.40 | 2BBOX | IV | Extracellular |
VviBBX19b | Vitvi04g01423.t01 | VIT_204s0023g03030.1 | GSVIVT01018818001 | RVW36633.1 | 555 | 184 | chr4: 19619474–19622085 (−) | 20366.2 | 6.87 | 2BBOX | IV | Extracellular |
VviBBX21a | Vitvi03g00026.t01 | VIT_203s0038g00340.1 | GSVIVT01024204001 | XP_002274649.1 | 909 | 302 | chr3: 310821–312269 (+) | 33371.52 | 7.79 | 2BBOX | IV | Nuclear |
VviBBX21b | Vitvi18g01048.t01 | VIT_218s0001g13520.1 | GSVIVT01009821001 | XP_002280716.1 | 912 | 303 | chr18: 11546101–11548030 (+) | 33157.15 | 6.65 | 2BBOX | IV | Nuclear |
VviBBX22a | Vitvi18g02424.t01 | VIT_218s0089g01280.1 | GSVIVT01037095001 | XP_019071822.1 | 618 | 205 | chr18: 34402834–34404843 (+) | 22812.56 | 5.05 | 2BBOX | IV | Nuclear |
VviBBX22b | Vitvi19g00031.t01 | VIT_219s0014g00350.1 | GSVIVT01014097001 | XP_002283666.1 | 882 | 293 | chr19: 356889–371959 (+) | 31682.56 | 4.87 | 2BBOX | IV | Extracellular |
VviBBX25 | Vitvi05g01519.t01 | VIT_205s0102g00750.1 | GSVIVT01010794001 | XP_002268700.1 | 720 | 239 | chr5: 23065597–23068639 (−) | 26443.94 | 4.61 | 2BBOX | IV | Extracellular |
VviBBX27 | Vitvi01g00346.t01 | VIT_201s0011g04240.1 | GSVIVT01011821001 | XP_002279997.2 | 1074 | 357 | chr1: 3849170–3854088 (+) | 39946.58 | 4.76 | 2BBOX | IV | Nuclear |
VviBBX28 | Vitvi10g02328.t01 | VIT_200s0203g00210.1 | – | RVW13823.1 | 639 | 212 | chrUn: 11688677–11689572 (−) | 23153.46 | 4.43 | 1BBOX | V | Nuclear |
VviBBX29a | Vitvi12g02441.t01 | VIT_212s0134g00400.1 | GSVIVT01000440001 | XP_002272924.1 | 900 | 299 | chr12: 8048322–8050082 (+) | 32306.61 | 4.06 | 1BBOX | V | Nuclear |
VviBBX29b | Vitvi19g00322.t01 | VIT_219s0014g03960.1 | GSVIVT01014471001 | XP_002284274.1 | 897 | 298 | chr19: 4194453–4195989 (−) | 32739.41 | 4.22 | 1BBOX | V | Nuclear |
VviBBX30 | Vitvi12g00543.t01 | VIT_212s0059g02510.1 | – | XP_010657357.1 | 384 | 127 | chr12: 7296673–7297056 (−) | 14258.41 | 7.71 | 1BBOX | V | Extracellular |
VviBBX32 | Vitvi09g01361.t01 | VIT_209s0054g00530.1 | – | RVX03703.1 | 783 | 260 | chr9: 21166392–21167745 (+) | 28155.08 | 8.67 | 1BBOX | V | Nuclear |