Table 1 General features of the H. erinaceus genome
General features | number | General features | number |
|---|---|---|---|
Size of assembled genome (Mb) | 38.16 | Pfam (genes) | 5611 |
N50_Length (Kb) | 258.72 | Pfam (CLAN) | 333 |
GC content (%) | 53 | SwissProt | 2267 |
Length of classified repeats (%) | 5 | KEGG alignment | 6854 |
Number of predicted gene models | 9780 | GO assignment | 5611 |
Average exon size (bp) | 235 | KOG assignment | 1822 |
Average intron size (bp) | 70 | TCDB | 277 |
Average gene length (bp) | 1355 | DFVF | 360 |
% of Genome (Genes) | 34.74 | PHI | 406 |
% of Genome (internal) | 65.26 | P450 | 95 |
Number of tRNA genes | 204 | Secretory Protein | 397 |
Number of Contigs | 20 | CAZy | 259 |
NR alignment | 7137 | Secondary metabolism clusters | 19 |