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Fig. 7 | BMC Genomics

Fig. 7

From: Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses

Fig. 7

Degradome profile of SPX-MFS1 mRNA directed for cleavage by miR827 in barley shoot using the PAREsnip2 approach. The red vertical line shows the cleavage position; the cleavage position 192 is within exon no. 2 in the 5′-UTR of the SPX-MFS1 transcript (p-value = 0.014). The black vertical lines show the positions within the SPX-MFS1 cDNA to which degradome fragments (reads) were mapped. The number of reads (fragment abundance) is depicted by the height of the red and black lines. Below the graph, the structure of the SPX-MFS1 transcript is presented. The white boxes denote UTRs, the gray boxes denote coding sequence, and the red dotted line denote the cleavage site within the 5′-UTR

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