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Fig. 3 | BMC Genomics

Fig. 3

From: Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

Fig. 3

OKI2018_I69 assembly of the Okinawan O. dioica. a Treemap comparison between the contig (left) and scaffold (right) assemblies of the O. dioica genome. Each rectangle represents a contig or a scaffold in the assembly with the area proportional to its length. b Comparison between the OKI2018_I69 (left) and OdB3 (right) linkage groups. The Sankey plot shows what proportion of each chromosome in the OKI2018_I69 genome is aligned to the OdB3 linkage groups. c Contact matrix generated by aligning Hi-C data set to the OKI2018_I69 assembly with Juicer and 3D-DNA pipelines. Pixel intensity in the contact matrices indicates how often a pair of loci collocate in the nucleus

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BMC Genomics

ISSN: 1471-2164

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