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Table 1 Assembly and gene annotation features of diplogastrid genomes

From: The community-curated Pristionchus pacificus genome facilitates automated gene annotation improvement in related nematodes

Species

Prabh et al. 2018

This study

Number of gene models

BUSCO odb9

C/D/F/M (%)

BUSCO odb10

C/D/F/M (%)

Number of gene models

BUSCO odb9

C/D/F/M (%)

BUSCO odb10

C/D/F/M (%)

P. exspectatus

31,172

79/7/6/8

67/6/2/25

35,595

85/7/5/4

77/7/2/14

P. arcanus

35,909

81/7/4/8

71/6/2/22

39,331

86/8/3/2

79/7/2/13

P. maxplancki

31,765

75/11/7/8

65/7/2/23

37,393

80/13/4/2

74/12/2/12

P. japonicus

31,996

77/8/6/10

68/7/2/23

36,638

84/9/4/4

76/9/2/13

P. mayeri

36,554

81/5/6/8

71/4/2/23

32,719

86/5/6/4

79/4/3/14

P. entomophagus

37,279

82/4/6/8

71/3/1/24

31,150

87/4/5/4

79/4/2/15

P. fissidentatus

25,634

83/2/6/10

73/2/2/24

28,283

87/2/7/4

80/3/3/15

P. giblindavisi

35,770

74/3/10/13

69/2/3/26

22,872

70/3/14/13

68/3/6/23

M. japonica

24,971

79/2/9/9

73/2/2/23

19,855

88/2/5/5

82/2/2/13

  1. The table shows a comparison between the previous [9] and the current gene annotations for nine diplogastrid genomes. The number of gene models is denoted together with the BUSCO results for the odb9 (N = 982 orthologs) and odb10 (N = 3131 orthologs). C Complete single copy, D Duplicated, F Fragmented, M Missing