Fig. 2

negative correlation between positive number of BLAST hits and SNP inclusion/compatibility. All 18,019 SNPs from the Illumina Infinium 20 K Apple Infinium array were considered. Three different stringency thresholds for a successful BLAST hit from the 50 nt Infinium probe sequences vs. the GDDH13v1.1 whole genome sequence were considered: 1E-12, 1E-14, and 1E-16. The numbers of SNPs within each group are listed in the included table. Higher numbers of BLAST hits were grouped together because of the diminishing number of SNPs that had higher numbers of BLAST hits. SNPs with accurate Infinium data were classified as included