Table 4 Variability of the four highly mutation hotspot regions and the universal chloroplast DNA barcodes in Distylium
From: Chloroplast phylogenomic insights into the evolution of Distylium (Hamamelidaceae)
Markers | Length (bp) | Polymorphic sites | Parsimony information sites | Mean distance | Nucleotide diversity | Number of haplotype |
|---|---|---|---|---|---|---|
matK-trnK | 827 | 8 | 3 | 0.00228 | 0.00227 | 7 |
trnT-trnL | 1170 | 9 | 4 | 0.00184 | 0.00173 | 7 |
ndhC-trnV | 961 | 6 | 4 | 0.00197 | 0.00198 | 7 |
ycf1 | 2306 | 20 | 5 | 0.00179 | 0.00179 | 9 |
Combination four variable markers | 5264 | 43 | 16 | 0.00191 | 0.00197 | 11 |
trnH-psbA | 367 | 2 | 0 | 0.00084 | 0.00084 | 2 |
matK | 1515 | 1 | 0 | 0.00010 | 0.00010 | 2 |
rbcL | 1428 | 3 | 3 | 0.00072 | 0.00072 | 3 |
Combination three universal markers | 3310 | 6 | 3 | 0.00045 | 0.00045 | 4 |