Table 2 Number of differentially expressed contigs between mantle tissue sections and annotation levels
From: Transcriptomic analysis of shell repair and biomineralization in the blue mussel, Mytilus edulis
Comparison | Differential expression | Annotationb | |||
|---|---|---|---|---|---|
Tissue in which genes are more highly expressed | FDRa <=0.001 | SwissProt | Trembl | SMP database | |
Undamaged valve: mantle edge vs. central mantle | Mantle edge | 8,955 | 2,293 | 4,001 | 220 |
Central mantle | 7,221 | 3,128 | 3,780 | 23 | |
Damaged valve: mantle edge vs. central mantle | Mantle edge | 7,340 | 2,039 | 3,484 | 155 |
Central mantle | 6,229 | 2,614 | 3,144 | 28 | |
Central mantle: Damaged vs. undamaged valve | Damaged valve | 653 | 131 | 236 | 54 |
Undamaged valve | 0 | 0 | 0 | 0 | |
Mantle edge: Damaged vs. undamaged valve | Damaged valve | 0 | 0 | 0 | 0 |
Undamaged valve | 0 | 0 | 0 | 0 | |