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Table 1 The general information and sequence characterization of 53 CaAAAP genes

From: Identification, systematic evolution and expression analyses of the AAAP gene family in Capsicum annuum

S.N.

Genea

Locusb

Locationc

ORF(bp)d

Exone

Proteinf

TM regiong

Size (aa)

MW(d)

pI

 

AAP group

        

1

CaAAP1

Capana07g002429

Chr07:220179435–220,181,692

1335

7

444

49,460.8

8.72

11

2

CaAAP2

Capana07g002430

Chr07:220188828–220,192,330

1869

10

622

68,584.1

8.46

14

3

CaAAP3

Capana07g002431

Chr07:220195003–220,198,004

1410

7

469

51,763.2

8.45

10

4

CaAAP4

Capana07g002432

Chr07:220225817:220233681

2532

13

843

93,224.4

8.88

17

5

CaAAP5

Capana04g000780

Chr04:14469803:14475148

1446

7

481

52,757.7

8.81

10

6

CaAAP6

Capana12g000826

Chr12:27187513:27194231

1467

7

488

53,825.3

8.94

9

7

CaAAP7

Capana08g002210

Chr08:143014796:143019992

1419

7

472

51,747.8

9.12

11

8

CaAAP8

Capana04g001588

Chr04:67204663:67207202

1434

6

477

52,413.8

8.27

10

9

CaAAP9

Capana06g001752

Chr06:50038242:50040303

1419

6

472

51,681.9

7.84

10

10

CaAAP10

Capana05g001770

Chr05:174328892:174330262

1020

3

339

37,207.9

6.86

7

 

LHT group

        

11

CaLHT1

Capana02g003614

Chr02:162887482:162890584

1350

8

449

50,428

8.6

9

12

CaLHT2

Capana02g003615

Chr02:162905774:162912940

1266

7

421

47,443

8.24

9

13

CaLHT3

Capana02g003616

Chr02:162914284:162921151

1332

8

443

49,858.6

9.08

11

14

CaLHT4

Capana04g002888

Chr04:215599914:215604069

1227

9

408

46,113.8

8.27

7

15

CaLHT5

Capana04g001881

Chr04:130533897:130536648

1329

6

442

49,917.6

8.06

10

16

CaLHT6

Capana11g000230

Chr11:5761051:5762379

1329

1

442

49,944.5

9.1

10

17

CaLHT7

Capana03g001379

Chr03:25005836:25008812

1329

7

442

49,012.6

9.4

11

18

CaLHT8

Capana05g000336

Chr05:7406911:7414486

1065

7

354

39,858.5

9.42

7

19

CaLHT9

Capana11g002248

Chr11:216341951:216346445

1311

8

436

48,573.9

9.03

8

20

CaLHT10

Capana04g000478

Chr04:7738487:7744000

1581

5

526

57,977.4

9.61

9

21

CaLHT11

Capana04g000098

Chr04:1109665:1112218

1338

5

445

49,110.6

8.68

10

22

CaLHT12

Capana08g002793

Chr08:152269921:152272976

1713

5

570

61,963

9.55

9

23

CaLHT13

Capana11g000398

Chr11:11019799:11021033

708

 

235

25,865.9

9.01

2

24

CaLHT14

Capana04g000106

Chr04:1178475:1183677

669

 

222

24,427.3

8.47

3

 

GAT group

        

25

CaGAT1

Capana00g003418

Chr00:545297054:545303475

1365

7

454

49,950.5

8.68

10

26

CaGAT2

Capana11g000210

Chr11:5435275:5440152

1092

6

363

39,923.8

9.98

9

 

ProT group

        

27

CaProT1

Capana05g001989

Chr05:191409867:191415970

1320

7

439

47,836.8

9.73

12

28

CaProT2

Capana05g001990

Chr05:191424542:191430181

1347

7

448

49,162.1

9.4

11

29

CaProT3

Capana03g002827

Chr03:118029421:118036334

1344

7

447

49,190.2

9.61

12

 

AUX group

        

30

CaAUX1

Capana09g001555

Chr09:181029189:181033262

1467

7

488

54,841.3

8.15

10

31

CaAUX2

Capana10g001370

Chr10:147549183:147556929

1467

7

488

54,912.8

8.56

10

32

CaAUX3

Capana04g001744

Chr04:99262090:99266939

1317

8

438

49,663.3

8.25

9

33

CaAUX4

Capana08g002704

Chr08:150979738:150984984

1482

8

493

55,541.5

8.75

10

 

ANT group

        

34

CaANT1

Capana02g002432

Chr02:144978448:144979728

1281

1

426

46,665.9

7.92

11

35

CaANT2

Capana02g002433

Chr02:144981268:144982602

1335

1

444

48,548.7

4.74

11

36

CaANT3

Capana02g002434

Chr02:144983909:144985192

1284

1

427

46,457.5

4.82

11

37

CaANT4

Capana04g002414

Chr04:201839016:201840293

1278

1

425

46,811.9

7.45

11

38

CaANT5

Capana03g004210

Chr03:248829547:248830964

930

2

309

33,786.3

10.06

10

 

ATLa group

        

39

CaATL1

Capana06g001998

Chr06:75940086:75942122

846

3

281

30,550.9

4.94

3

40

CaATL2

Capana03g000522

Chr03:7178172:7179590

1419

1

472

51,153.5

5.43

10

41

CaATL3

Capana05g002081

Chr05:197860240:197862960

1302

6

433

47,459.1

8.35

11

42

CaATL4

Capana00g004937

Chr00:676629079:676631743

1320

5

439

47,898.6

8.55

11

43

CaATL5

Capana04g000715

Chr04:12477359:12484737

1344

5

447

48,657.5

8.36

11

44

CaATL6

Capana02g000804

Chr02:93929776:93933801

1407

5

468

50,795.2

8.78

11

45

CaATL7

Capana02g003206

Chr02:157224580:157228911

1383

5

460

49,954.5

8.55

11

 

ATLb group

        

46

CaVAAT1

Capana00g004212

Chr00:618994856:618996151

1296

1

431

46,618.7

7.96

8

47

CaVAAT2

Capana04g001726

Chr04:93008498:93010474

1281

3

426

46,958.9

7.71

10

48

CaVAAT3

Capana12g002556

Chr12:222093246:222094767

1017

2

338

36,992

7.91

9

49

CaVAAT4

Capana05g002349

Chr05:207916251:207920239

1140

3

379

41,865.5

9.04

9

50

CaVAAT5

Capana03g003057

Chr03:162840327:162847744

1395

9

464

51,484.7

4.27

7

51

CaVAAT6

Capana10g001696

Chr10:173666186:173669984

1608

11

535

57,908.7

5.19

10

52

CaVAAT7

Capana03g002859

Chr03:127734852:127743213

1338

7

445

48,690.8

4.98

5

53

CaVAAT8

Capana12g002523

Chr12:220748120:220761121

1989

15

662

73,214.4

5.85

8

  1. S.N serial number, ORF open reading frame, bp base pair, aa amino acids, MW molecular weight, pI isoelectric point, TM transmembrane, NA not available
  2. aSystematic designation given to pepper AAAPs in this study
  3. bLocus identity number of AAAP assigned by Pepper Genome Database2 (http://peppersequence.genomics.cn/page/)
  4. cChromosomal localization of pepper AAAP genes
  5. dLength of the open reading frame
  6. eNumber of extrons obtained from GSDS by comparing sequences between transcript and genome (Gene Structure Display Server; http://gsds.cbi.pku.edu.cn/)
  7. fProtein characterization of CaAAAPs obtained from EXPASY server (http://web.expasy.org/protparam/)
  8. gNumber of transmembrane segments possessed by CaAAAPs, predicted by the TMHMM Server v2.0