Table 7 Candidate genes associated with potential SNPs and functional annotations
Gene_ID | Traits | Chr | SNP Position | Distance(bp) | Gene type | Functional annotation/biological pathway |
|---|---|---|---|---|---|---|
Zm00001d043773 | ARD | 3 | 209,661,144 | 0 | exon,synonymous | Putative clathrin assembly protein |
Zm00001d038558 | ARD | 6 | 159,805,368 | 0 | UTR3 | cystatin3, CC3, Cysteine proteinase inhibitor 2, |
Zm00001d029482 | RBN | 1 | 72,599,741 | 0 | intronic | NAD(P)-binding Rossmann-fold superfamily protein |
Zm00001d030376 | RBN | 1 | 127,352,056 | 0 | intronic | ATP-dependent DNA helicase |
Zm00001d001900 | RBN | 2 | 2,564,296 | 0 | intronic | Probable cysteine protease RD21B |
Zm00001d003119 | RBN | 2 | 32,824,965 | 0 | intronic | Trafficking protein particle complex II-specific subunit 120 homolog |
Zm00001d005925 | RBN | 2 | 192,996,724 | 0 | UTR5 | Glucose-6-phosphate isomerase 1 chloroplastic, |
Zm00001d006030 | RBN | 2 | 195,707,091 | 0 | intergenic | ENT domain-containing protein |
Zm00001d042535 | RBN | 3 | 171,057,172 | 0 | intronic | selenoprotein family protein |
Zm00001d050783 | RBN | 4 | 122,501,344 | 0 | exon,nonsynonymous | Molybdopterin synthase sulfur carrier subunit |
Zm00001d015379 | RBN | 5 | 87,176,006 | 0 | exon,nonsynonymous | Splicing factor arginine/serine-rich 12 |
Zm00001d016858 | RBN | 5 | 178,455,944 | 0 | UTR3 | Ankyrin repeat protein SKIP35 |
Zm00001d017751 | RBN | 5 | 205,892,847 | 0 | exon,nonsynonymous | Pentatricopeptide repeat-containing protein (chloroplastic) |
Zm00001d018496 | RBN | 5 | 221,805,144 | 0 | exon,synonymous | Pumilio homolog 4 |
Zm00001d037546 | RBN | 6 | 128,905,260 | 0 | intronic | unknown |
Zm00001d038676 | RBN | 6 | 162,388,475 | 0 | exon,synonymous | Probable xyloglucan glycosyltransferase 12, |
Zm00001d009896 | RBN | 8 | 88,347,963 | 0 | exon,nonsynonymous | unknown |
Zm00001d047946 | RBN | 9 | 145,938,150 | 0 | intronic | Cell cycle checkpoint protein RAD17 |
Zm00001d003405 | RBN, ROV, SUA | 2 | 43,293,834 | 5823 | intergenic | Bifunctional inhibitor/lipid-transfer protein/seed storage 2Â S albumin superfamily protein |
Zm00001d001841 | RBN, SUA | 2 | 1,707,072 | 0 | intronic | unknown |
Zm00001d019766 | RBN, SUA | 7 | 58,218,452 | -5544 | intergenic | RING/U-box superfamily protein |
Zm00001d029683 | RDW | 1 | 82,567,249 | 0 | exon,nonsynonymous | irregular pollen exine1 |
Zm00001d017279 | RDW | 5 | 191,539,297 | 0 | exon,nonsynonymous | Phenylalanine ammonia lyase7 |
Zm00001d020485 | RDW | 7 | 118,512,703 | 0 | UTR5 | Golgi SNAP receptor complex member 1 |
Zm00001d023292 | RDW | 10 | 2,246,081 | 0 | exon,synonymous | Trigger factor-like protein TIG Chloroplastic |
Zm00001d015290 | RDW, ROV, SUA | 5 | 82,882,718 | 2998 | intergenic | Adagio protein 1 |
Zm00001d032558 | RDW, SUA | 1 | 230,477,446 | 20,619 | intergenic | unknown |
Zm00001d028001 | RDW/SDW | 1 | 19,943,384 | 0 | UTR3 | Unknown |
Zm00001d031009 | ROV | 1 | 173,181,844 | 0 | intronic | Protein tesmin/TSO1-like CXC 2 |
Zm00001d002751 | ROV | 2 | 21,486,113 | 0 | intronic | Probable isoaspartyl peptidase/L-asparaginase 3 |
Zm00001d004960 | ROV | 2 | 150,754,726 | 0 | intronic | 2-isopropylmalate synthase 1 chloroplastic |
Zm00001d005264 | ROV | 2 | 166,210,299 | 0 | exon,synonymous | Tetratricopeptide repeat (TPR)-like superfamily protein |
Zm00001d039693 | ROV | 3 | 12,060,838 | 0 | intronic | Protein RST1 |
Zm00001d043059 | ROV | 3 | 187,822,582 | 0 | UTR5 | Protein FATTY ACID EXPORT 3 chloroplastic, |
Zm00001d015779 | ROV | 5 | 118,806,068 | 0 | intronic | 14-3-3-like protein GF14 omega |
Zm00001d035487 | ROV | 6 | 28,955,506 | 0 | intronic | E3 SUMO-protein ligase SIZ1 |
Zm00001d032473 | ROV, RDW, SUA | 1 | 227,871,089 | 0 | exon,nonsynonymous | CDPK-related kinase 3 |
Zm00001d053827 | ROV, TRL | 4 | 241,936,576 | -2034 | intergenic | BEACH domain-containing protein B |
Zm00001d001901 | SUA | 2 | 2,610,094 | 0 | UTR3 | Reticulon-like protein B11 |
Zm00001d041070 | SUA | 3 | 94,781,431 | 0 | intronic | 5-methylthioadenosine/S-adenosylhomocysteine deaminase, |
Zm00001d013252 | SUA | 5 | 7,141,374 | 0 | UTR3 | 60Â S ribosomal protein L13a-1 |
Zm00001d015788 | SUA | 5 | 119,718,590 | 0 | UTR3 | proteasome component4, 26Â S protease regulatory subunit S10B |
Zm00001d018235 | SUA | 5 | 217,144,020 | 0 | intronic | unknown |
Zm00001d022502 | SUA | 7 | 179,029,112 | 0 | intronic | Exocyst complex component Sec. 8 |
Zm00001d029482 | TRL | 1 | 72,599,769 | 0 | intronic | NAD(P)-binding Rossmann-fold superfamily protein |
Zm00001d004438 | TRL | 2 | 111,734,317 | 0 | intronic | Pullulanase-type starch debranching enzyme1 |
Zm00001d040704 | TRL | 3 | 59,237,040 | 0 | exon,nonsynonymous | ATP-dependent DNA helicase |
Zm00001d037546 | TRL | 6 | 128,905,254 | 0 | intronic | unknown |