Table 1 Metrics for the Diabrotica virgifera virgifera genome assembly, Dvir_v2.0
Metric | Dvir_2.01 |
|---|---|
Contig assembly | |
Total number | 586,720 |
Length (bp) | 1,850,691,159 |
N50 (Mb) | 6,227 |
L50 | 84,395 |
N90 (bp) | 313,452 |
L90 | 1,581 |
Largest contig (bp) | 79,911 |
Scaffold assembly | |
Total number | 87,712 |
Length (bp) | 2,418,073,815 |
GC content (%) | 25.2 |
Gaps | 499,008 |
N bases (within gaps) | 567,382,656 |
N50 (bp) | 489,108 |
L50 | 1,128 |
N90 (bp) | 37,112 |
L90 | 7,527 |
Largest contig (bp) | 8,068,850 |
BUSCOs (arthropoda_odb10) | |
Complete (C) | 948 (93.6%) |
Complete single copy (S) | 931 (91.9%) |
Complete duplicated (D) | 17 ( 1.7%) |
Fragmented (F) | 46 ( 4.5%) |
Missing (M) | 19 ( 1.9%) |
Gene Annotations2 | |
RefSeq gene models | 25,094 |
RefSeq mRNA and protein models | 28,061 |
fully-supported3 | 23,405 |
RefSeq protein-coding gene models | 20,592 |
RefSeq non-coding | 4,502 |
RefSeq pseudogenes | 304 |
Repeat content4 | 53.0% |