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Table 6 The SNPs associated with pasting properties (P < 10–4)

From: Genome-wide association study of quality traits and starch pasting properties of maize kernels

Trait

SNP

Chr

Genotype

Bin

Position

P-value

Environment

PV

SYN12772

3

A/G

3.03

35,084,281

4.40E-05

2016JZ

PZE_103091447

3

G/T

3.05

147,223,326

5.26E-06

2016JZ

PZE_103096842

3

A/G

3.05

155,433,336

2.35E-05

2016JZ

PZE_105156016

5

A/C

5.06

204,313,319

5.36E-05

2015LY

PZE_109088783

9

A/G

9.05

132,519,775

5.29E-05

2017JZ

TV

PZE_103091447

3

G/T

3.05

147,223,326

8.95E-05

2016JZ

PZE_105155546

5

A/C

5.05

204,021,851

6.33E-05

2016JZ

PZE_105156016

5

A/C

5.06

204,313,319

6.21E-05

2015LY

PZE_106067257

6

C/T

6.04

120,189,163

2.74E-05

2016JZ

PZE_108073083

8

C/T

8.05

126,033,112

1.11E-05

2017JZ

PZE_108100984

8

C/T

8.06

155,557,132

3.44E-05

2017JZ

PZE_109109322

9

C/T

9.06

145,602,633

6.84E-05

2016JZ

BD

PZE_101120543

1

G/T

1.05

148,525,339

8.89E-06

2016JZ

PZE_103094159

3

A/C

3.05

151,148,617

8.56E-05

2016JZ

PZE_103084229

3

C/T

3.05

135,898,087

4.29E-05

2017JZ

PZE_105054501

5

G/T

5.03

50,733,228

1.25E-05

2017JZ

SYN21058

6

A/G

6.00

3,779,374

1.96E-07

2017JZ

SYN11767

9

A/C

9.02

14,438,563

2.06E-05

2016JZ

FV

PZE_101122760

1

C/T

1.05

153,387,202

5.75E-05

2015LY

PZE_101147239

1

C/T

1.06

190,610,531

1.00E-06

2016JZ

PZE_103046325

3

G/T

3.04

48,015,853

6.88E-05

2015LY

PZE_103096842

3

A/G

3.05

155,433,336

1.72E-06

2016JZ

PZE_104089684

4

A/G

4.06

164,750,722

4.08E-05

2015LY

PZE_106039028

6

A/C

6.01

86,297,303

1.31E-06

2016JZ

PZE_106067257

6

C/T

6.04

120,189,163

3.64E-06

2017JZ

SYN26334

9

A/C

9.05

132,885,794

2.98E-05

2015LY

PZE_110040421

10

A/C

10.03

77,111,930

1.65E-06

2017JZ

SB

PZE_101122760

1

C/T

1.05

153,387,202

5.95E-05

2015LY

PZE_103046325

3

G/T

3.04

48,015,853

7.12E-05

2015LY

PZE_104089684

4

A/G

4.06

164,750,722

5.71E-05

2015LY

PZE_104099048

4

C/T

4.07

174,469,971

1.23E-06

2016JZ

PZE_106039028

6

A/C

6.01

86,297,303

7.74E-06

2016JZ

PZE_107043379

7

C/T

7.02

74,685,305

2.88E-05

2016JZ

SYN26334

9

A/C

9.05

132,885,794

3.43E-05

2015LY

PZE_110040421

10

A/C

10.03

77,111,930

6.09E-06

2017JZ

PT

SYN9068

1

A/C

1.07

210,940,058

2.56E-05

2015QZ

SYN33389

3

A/C

3.08

213,893,310

7.71E-06

2016JZ

PZE_104099048

4

C/T

4.07

174,469,971

3.86E-05

2015LY

PZE_106049618

6

C/T

6.03

98,823,263

3.78E-09

2016JZ

PZE_107060445

7

C/T

7.02

110,670,176

6.58E-06

2017JZ

PZE_107060447

7

A/C

7.02

110,670,253

2.86E-05

2017JZ

SYN32385

7

G/T

7.03

129,793,852

7.70E-05

2016JZ

SYN32384

7

A/G

7.03

129,793,957

7.70E-05

2016JZ

PTP

PZE_104039782

4

C/T

4.05

59,365,625

3.71E-05

2017JZ

PZE_105099535

5

C/G

5.04

146,962,269

8.28E-05

2015LY

PZE_106103881

6

A/G

6.06

155,397,283

2.64E-05

2017JZ

PZE_108031001

8

C/G

8.03

35,001,109

2.41E-05

2015LY

PZE_109054108

9

G/T

9.03

90,505,476

3.77E-06

2015LY

  1. PV Peak viscosity, TV Trough viscosity, FV Final viscosity, SB Setback (FV − TV), PT Peak time, PTP Pasting temperature