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Table 3 Differentially expressed genes at both mRNA and protein levels in the atretic and normal follicles in geese

From: Integrated transcriptome and proteome revealed that the declined expression of cell cycle-related genes associated with follicular atresia in geese

Unigenes IDa

Symbol

description

mRNAb

Proteinc

Cluster-9112.25489

MMP3

Anser cygnoides domesticus stromelysin-1-like (LOC106034136)

UP

UP

Cluster-9112.17124

NAV1

PREDICTED: Anas platyrhynchos neuron navigator 1

UP

UP

Cluster-9112.8189

ANXA1

Anser cygnoides domesticus annexin A1

UP

UP

Cluster-9112.11671

ADX

adrenodoxin-like (LOC106045559), transcript variant X3

DOWN

DOWN

Cluster-9112.15071

GNS

Anser cygnoides domesticus glucosamine (N-acetyl)-6-sulfatase

DOWN

DOWN

Cluster-9112.8001

CPN1

Anas platyrhynchos carboxypeptidase N subunit 1, transcript variant X2,

DOWN

DOWN

Cluster-9112.15106

CSGA

Anas platyrhynchos C-factor (LOC101798590)

DOWN

DOWN

Cluster-9112.18299

VTN

Anas platyrhynchos vitronectin (VTN), transcript variant X1

DOWN

DOWN

Cluster-9112.27886

MLEX

Anser cygnoides domesticus myosin, light chain 4, alkali; atrial, embryonic (MYL4), transcript variant X3

DOWN

UP

Cluster-9112.14822

TAGLN

Gallus gallus transgelin (TAGLN), mRNA && M83105.1 Chicken SM22 mRNA, complete cds

DOWN

UP

Cluster-9112.16594

COL11A1

Anas platyrhynchos collagen type XI alpha 1 chain (COL11A1), transcript variant X2

DOWN

UP

Cluster-9112.16021

FMOD

Anas platyrhynchos fibromodulin (FMOD)

DOWN

UP

Cluster-9112.15059

RCN1

Anser cygnoides domesticus reticulocalbin 1, EF-hand calcium binding domain (RCN1)

DOWN

UP

Cluster-9112.22106

FCGBP

Nipponia nippon IgGFc-binding protein-like (LOC104012603),

UP

DOWN

Cluster-9112.21861

–

Anser cygnoides domesticus uncharacterized (LOC106034650),

UP

DOWN

  1. aThe unique identification number of a gene in the sequencing file
  2. bThe upregulation or downregulation of genes in transcriptome of atretic follicles compared to normal follicles
  3. cThe upregulation or downregulation of genes in the proteome of atretic follicles compared to normal follicles