From: A new and efficient enrichment method for metagenomic sequencing of Monkeypox virus
Sample | Run | Enriched | Original | Illumina QC | BMTagger | Kraken2 | Lost reads (%) |
---|---|---|---|---|---|---|---|
MP01bCHUAC | A | No | 7,755,402 | 5,897,356 | 306,422 | 179,086 | 97.69 |
MP03bCHUAC | A | No | 5,204,934 | 4,020,926 | 406,616 | 374,718 | 92.80 |
MP01CHUAC | B | Yes | 6,490,118 | 4,745,690 | 4,652,024 | 3,360,370 | 48.22 |
MP03CHUAC | B | Yes | 5,702,680 | 4,030,170 | 4,002,176 | 2,695,288 | 52.74 |
MP05CHUAC | C | Yes | 1,344,132 | 1,107,962 | 1,086,984 | 895,266 | 33.39 |
MP07CHUAC | C | Yes | 1,376,066 | 1,111,552 | 1,096,070 | 878,534 | 36.16 |
MP08CHUAC | C | Yes | 1,283,180 | 1,065,560 | 1,049,670 | 926,132 | 27.83 |
MP13CHUAC | C | Yes | 1,576,732 | 1,149,468 | 1,025,064 | 631,872 | 59.93 |
MP15CHUAC | C | Yes | 1,577,718 | 1,153,646 | 1,081,148 | 766,788 | 51.40 |
MP18CHUAC | C | Yes | 1,679,854 | 1,136,220 | 1,053,980 | 921,610 | 45.14 |
MP19CHUAC | C | Yes | 1,430,186 | 1,063,796 | 999,180 | 739,596 | 48.29 |
MP22CHUAC | C | Yes | 1,670,392 | 1,317,902 | 1,207,964 | 817,532 | 51.06 |