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Fig. 2 | BMC Genomics

Fig. 2

From: Stochastic nuclear organization and host-dependent allele contribution in Rhizophagus irregularis

Fig. 2

Polymorphisms found in the RirC3 45S rDNA locus. a Graph showing the amount of genetic variation among 45S rDNA copies. b Phylogenetic representation based on of multiple sequence alignment (1000 bootstraps) of the eight 45S rDNA copies. No copies were identical. The names of the samples correspond to which contig they were found on (e.g. ribo_cont466_1 was the first copy on contig_466 of the RirC3 assembly). Red numbers indicate support values. c Example of biallelic SNPs in the rDNA sequence distributed over different nuclei. The reference and alternate alleles for a 28S subregion of ribo_contig466_1 in the C3 gDNA and 3 individually sequenced nuclei (C3Nuc9, C3Nuc38 and C3Nuc46) are shown

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