Table 1 RirC3 genome assembly overview
From: Stochastic nuclear organization and host-dependent allele contribution in Rhizophagus irregularis
Total assembly length | 155,051,422 |
|---|---|
Contigs | 1380 |
Gaps | 2 |
GC content | 27.94% |
Longest contig length | 1,364,683 |
Average contig length | 112.356 |
Contig N50 length | 263.815 |
Contig L50 | 174 |
Contig N90 length | 63.299 |
Contig L90 | 605 |
Total repeat length | 71,617,038 |
Percentage of genome composed of repeats | 46.19% |
Total number of biallelic SNPs in the meta genome | 121.109 |
Non-synonymous SNPs | 10,677 |
Stop codon gains | 381 |
Frameshift gains | 487 |
SNP frequency | 0,78/kb |
SNP density outside repeats | 0,59/kb |
Number of predicted genes | 27,181 |
PFAM domains | 3714 |
BUSCO (fungi_odb10) | 84.3% (639/758) |
Complete and single-copy BUSCO genes | 82.6% (626/758) |
Complete and duplicated BUSCO genes | 1.7% (13/758) |
Fragmented BUSCO genes | 1.2% (9/758) |
Missing BUSCO genes | 14.5% (110/758) |