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Fig. 5 | BMC Genomics

Fig. 5

From: Contribution of RdDM to the ecotype-specific differential methylation on conserved as well as highly variable regions between Arabidopsis ecotypes

Fig. 5

Correlation between SNPs and methylation level and position of CR and Col SR. a The correlation between the number of SNPs and DNA methylation is analyzed. Numbers in X-axis represent the number of SNPs in a 50-bp window. b The windows overlapped in gene and transposable element (TE) from each CR, and Col SR was analyzed. The positive correlation shown in CR in (a) is strongly demonstrated in TE, and the negative correlation shown in Col SR in (a) is not shown in the windows overlapped with TE, but it is shown in the windows overlapped with gene. The height of the bar, mean; the length of error bar, std. c Methylation level according to each substitution, obtained by comparing Col and Cvi (the first letter is from Col), was normalized with mean and standard deviation (\(\frac{x-m}{\sigma }\)). a-c Methylation level of Col FH was used as a representative. d The position of CR and Col SR was analyzed in chromosomal view

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BMC Genomics

ISSN: 1471-2164

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