Table 1 The RNA-seq mapping reads of goat reference genome
Samples | Raw Reads | Clean Reads | Error Rate | Mapped Reads | Mapping Ratio | Uniquely mapped | Uniquely Mapping Ratio |
|---|---|---|---|---|---|---|---|
IMA1 | 106,965,744 | 104,026,824 | 0.01% | 58,826,296 | 56.55% | 53,818,519 | 51.74% |
IMA2 IMA3 IMA4 IMA5 | 97,739,340 | 95,783,582 | 0.01% | 52,467,109 | 54.78% | 49,088,892 | 51.25% |
IMA3 | 100,355,022 | 98,296,238 | 0.02% | 64,127,686 | 65.24% | 59,783,468 | 60.82% |
IMA4 IMA3 IMA4 IMA5 | 87,081,698 | 85,127,438 | 0.02% | 4,935,928 | 57.98% | 46,064,921 | 54.11% |
IMA5 | 93,900,560 | 92,052,240 | 0.01% | 53,774,996 | 58.42% | 49,952,000 | 54.26% |
IMPA1 | 89,914,112 | 87,780,640 | 0.02% | 80,670,979 | 91.9% | 73,919,641 | 84.21% |
IMPA2 IMPA1 | 89,869,988 | 87,544,572 | 0.02% | 70,588,932 | 80.63% | 64,477,079 | 73.65% |
IMPA3 | 86,513,066 | 84,676,776 | 0.02% | 79,535,538 | 93.93% | 72,354,034 | 85.45% |
IMPA4 IMPA1 | 93,072,522 | 91,173,148 | 0.01% | 78,490,007 | 86.09% | 71,794,446 | 78.75% |
IMPA5 | 103,727,284 | 100,918,664 | 0.02% | 96,226,399 | 95.3% | 88,134,788 | 87.33% |