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  1. Collective cell migration underlies many essential processes, including sculpting organs during embryogenesis, wound healing in the adult, and metastasis of cancer cells. At mid-oogenesis, Drosophila border cells...

    Authors: Emily Burghardt, Jessica Rakijas, Antariksh Tyagi, Pralay Majumder, Bradley J.S.C. Olson and Jocelyn A. McDonald
    Citation: BMC Genomics 2023 24:728
  2. While genome-resolved metagenomics has revolutionized our understanding of microbial and genetic diversity in environmental samples, assemblies of short-reads often result in incomplete and/or highly fragmente...

    Authors: Sophie A. Simon, Katharina Schmidt, Lea Griesdorn, André R. Soares, Till L. V. Bornemann and Alexander J. Probst
    Citation: BMC Genomics 2023 24:727
  3. Pre-exposing plants to abiotic stresses can induce stress memory, which is crucial for adapting to subsequent stress exposure. Although numerous genes involved in salt stress response have been identified, the...

    Authors: Zhiying Zhu, Yan Dai, Guangrun Yu, Xin Zhang, Qi Chen, Xiaobing Kou, Eid M. Mehareb, Ghulam Raza, Baohong Zhang, Baohua Wang, Kai Wang and Jinlei Han
    Citation: BMC Genomics 2023 24:726
  4. In recent single-cell -omics studies, both the differential activity of transcription factors regulating cell fate determination and differential genome activation have been tested for utility as descriptors o...

    Authors: Sami Kilpinen, Heidi Heliölä and Kaia Achim
    Citation: BMC Genomics 2023 24:725
  5. MicroRNA (miRNA) which can act as post-transcriptional regulators of mRNAs via base-pairing with complementary sequences within mRNAs is involved in processes of the complex interaction between immune system a...

    Authors: Cheng Liu, Chun Yu, Guoxin Song, Xingchen Fan, Shuang Peng, Shiyu Zhang, Xin Zhou, Cheng zhang, Xiangnan Geng, Tongshan Wang, Wenfang Cheng and Wei Zhu
    Citation: BMC Genomics 2023 24:724
  6. Patinopecten yessoensis, a large and old molluscan group, has been one of the most important aquaculture shellfish in Asian countries because of its high economic value. However, the aquaculture of the species ha...

    Authors: Yiying Wang, Junxia Mao, Zhiyue Fan, Yunna Hang, AnQi Tang, Ying Tian, Xubo Wang, Zhenlin Hao, Bing Han, Jun Ding and Yaqing Chang
    Citation: BMC Genomics 2023 24:723
  7. Cell type-specific differential gene expression analyses based on single-cell transcriptome datasets are sensitive to the presence of cell-free mRNA in the droplets containing single cells. This so-called ambi...

    Authors: Marijn Berg, Ilya Petoukhov, Inge van den Ende, Kerstin B. Meyer, Victor Guryev, Judith M. Vonk, Orestes Carpaij, Martin Banchero, Rudi W. Hendriks, Maarten van den Berge and Martijn C. Nawijn
    Citation: BMC Genomics 2023 24:722
  8. The prevalence of obese children in China is increasing, which poses a great challenge to public health. Gut microbes play an important role in human gut health, and changes in gut status are closely related t...

    Authors: Ping Li, Jiyang Jiang, Yifei Li, Yue Lan, Fan Yang, Jiao Wang, Yuxin Xie, Fei Xiong, Jinhui Wu, Hanmin Liu and Zhenxin Fan
    Citation: BMC Genomics 2023 24:721
  9. Numerous factors influence the growth and development of cashmere. Existing research on cashmere has predominantly emphasized a single omics level. Integrating multi-omics analyses can offer a more comprehensi...

    Authors: Yanan Xu, Yu Zhang, Yuting Qin, Ming Gu, Rui Chen, Yinggang Sun, Yanzhi Wu, Qian Li, Yanjun Qiao, Xiaowei Wang, Qiu Zhang, Lingchao Kong, Shuaitong Li and Zeying Wang
    Citation: BMC Genomics 2023 24:720
  10. Adventitious roots (ARs) represent an important organ system for water and nutrient uptake in lotus plants because of degeneration of the principal root. The WUSCHEL-related homeobox (WOX) gene regulates plant de...

    Authors: Liu quan, Liang Shiting, Zhao Chen, Han Yuyan, Zhao Minrong, Li Shuyan and Cheng Libao
    Citation: BMC Genomics 2023 24:719
  11. Two-component systems (TCSs) assume a pivotal function in Mycobacterium tuberculosis (M.tuberculosis) growth. However, the exact regulatory mechanism of this system needs to be elucidated, and only a few studies ...

    Authors: Yameng Li, Xianglong Kong, Yifan Li, Ningning Tao, Yawei Hou, Tingting Wang, Yingying Li, Qilin Han, Yao Liu and Huaichen Li
    Citation: BMC Genomics 2023 24:718
  12. Cell annotation is a crucial methodological component to interpreting single cell and spatial omics data. These approaches were developed for single cell analysis but are often biased, manually curated and yet...

    Authors: Felipe Segato Dezem, Maycon Marção, Bassem Ben-Cheikh, Nadya Nikulina, Ayodele Omotoso, Destiny Burnett, Priscila Coelho, Judith Hurley, Carmen Gomez, Tien Phan-Everson, Giang Ong, Luciano Martelotto, Zachary R. Lewis, Sophia George, Oliver Braubach, Tathiane M. Malta…
    Citation: BMC Genomics 2023 24:717
  13. The phylogenetic position and classification of Athysanini are poorly defined, as it includes a large group of polyphyletic genera that have historically been assigned to it mainly because they still exhibit t...

    Authors: Muhammad Asghar Hassan, Zhixiang Tan, Rongrong Shen and Jichun Xing
    Citation: BMC Genomics 2023 24:714
  14. Bryozoans are mostly sessile aquatic colonial invertebrates belonging to the clade Lophotrochozoa, which unites many protostome bilaterian phyla such as molluscs, annelids and brachiopods. While Hox and ParaHo...

    Authors: Ahmed J. Saadi, André Luiz de Oliveira, Kevin M. Kocot and Thomas Schwaha
    Citation: BMC Genomics 2023 24:711
  15. Colletotrichum siamense is a hemibiotrophic ascomycetous fungus responsible for mango anthracnose. The key genes involved in C. siamense infection remained largely unknown. In this study, we conducted weighted ge...

    Authors: Zongling Liu, Zhengjie Zhu, Yuanhe Huang, Song Nong, Minli Jiang, Sangui Yi, Delong Xie and Hongliu Hu
    Citation: BMC Genomics 2023 24:710
  16. As the fetal heart develops, cardiomyocyte proliferation potential decreases while fatty acid oxidative capacity increases in a highly regulated transition known as cardiac maturation. Small noncoding RNAs, su...

    Authors: Adar Aharon-Yariv, Yaxu Wang, Abdalla Ahmed and Paul Delgado-Olguín
    Citation: BMC Genomics 2023 24:709
  17. Forsythia suspensa (Thunb.) Vahl is a valuable ornamental and medicinal plant. Although the nuclear and chloroplast genomes of F. suspensa have been published, its complete mitochondrial genome sequence has yet t...

    Authors: Yun Song, Xiaorong Du, Aoxuan Li, Amei Fan, Longjiao He, Zhe Sun, Yanbing Niu and Yonggang Qiao
    Citation: BMC Genomics 2023 24:708
  18. Basic leucine zipper (bZIP) protein is a plant-specific transcription factor involved in various biological processes, including light signaling, seed maturation, flower development, cell elongation, seed accumul...

    Authors: Xiaozong Wu, Changhe Cheng, Rui Ma, Jianbo Xu, Congcong Ma, Yutao Zhu and Yanyan Ren
    Citation: BMC Genomics 2023 24:705
  19. Eggshell speckle phenotype is an important trait in poultry production because they affect eggshell quality. However, the genetic architecture of speckled eggshells remains unclear. In this study, we determine...

    Authors: Xue Cheng, Xinghua Li, Mengyuan Yang, Chuanwei Zheng, Haiying Li, Lujiang Qu and Zhonghua Ning
    Citation: BMC Genomics 2023 24:704
  20. The Aconitum genus is a crucial member of the Ranunculaceae family. There are 350 Aconitum species worldwide, with about 170 species found in China. These species are known for their various pharmacological effec...

    Authors: Meihua Yang, Jiahao Liu, Wanqing Yang, Zhen Li, Yonglin Hai, Baozhong Duan, Haizhu Zhang, Xiaoli Yang and Conglong Xia
    Citation: BMC Genomics 2023 24:703
  21. Animals typically have either compound eyes, or camera-type eyes, both of which have evolved repeatedly in the animal kingdom. Both eye types include two important kinds of cells: photoreceptor cells, which ca...

    Authors: Shubham Rathore, Aaron Stahl, Joshua B. Benoit and Elke K. Buschbeck
    Citation: BMC Genomics 2023 24:702
  22. Aplasia cutis congenita (ACC) is a rare genetic disorder characterized by the localized or widespread absence of skin in humans and animals. Individuals with ACC may experience developmental abnormalities in t...

    Authors: Fuchen Zhou, Shenghui Wang, Haojun Qin, Haiyu Zeng, Jian Ye, Jie Yang, Gengyuan Cai, Zhenfang Wu and Zebin Zhang
    Citation: BMC Genomics 2023 24:701
  23. Avian pathogenic Escherichia coli (APEC) are the causative agents of colibacillosis in chickens, a disease which has significant economic impact on the poultry industry. Large plasmids detected in APEC are known ...

    Authors: Haley Sanderson, Madeline C. McCarthy, Chinenye R. Nnajide, Jessica Sparrow, Joseph E. Rubin, Jo-Anne R. Dillon and Aaron P. White
    Citation: BMC Genomics 2023 24:698
  24. Isabel Island is a Mexican volcanic island primarily composed of basaltic stones. It features a maar known as Laguna Fragatas, which is classified as a meromictic thalassohaline lake. The constant deposition o...

    Authors: Luis Mario Hernández-Soto, Francisco Martínez-Abarca, Hugo Ramírez-Saad, Marcos López-Pérez and José Félix Aguirre-Garrido
    Citation: BMC Genomics 2023 24:696
  25. Reference genomes provide a foundational framework for evolutionary investigations, ecological analysis, and conservation science, yet uncertainties in the assembly of reference genomes are difficult to assess...

    Authors: Trevor T. Bringloe and Geneviève J. Parent
    Citation: BMC Genomics 2023 24:693
  26. Artemisia annua is the major source for artemisinin production. The artemisinin content in A. annua is affected by different types of light especially the UV light. UVR8, a member of RCC1 gene family was found to...

    Authors: Jieting Chen, Wenguang Wu, Xiaoxia Ding, Danchun Zhang, Chunyan Dai, Hengyu Pan, Peiqi Shi, Chanjuan Wu, Jun Zhang, Jianmin Zhao, Baosheng Liao, Xiaohui Qiu and Zhihai Huang
    Citation: BMC Genomics 2023 24:692
  27. The Hui people are the second-largest ethnic minority in China, and they are distributed throughout the country. A previous study explored the paternal genetic structure of the Hui population in nine different...

    Authors: Dazhi Fu, Atif Adnan, Jun Yao, Noura H. Aldayan, Chuan-Chao Wang and Cao Hongyi
    Citation: BMC Genomics 2023 24:691
  28. As a population genetic tool, mitochondrial DNA is commonly divided into the ~ 1-kb control region (CR), in which single nucleotide variant (SNV) diversity is relatively high, and the coding region, in which s...

    Authors: Emily C. Patterson, Gurdeep Matharu Lall, Rita Neumann, Barbara Ottolini, Chiara Batini, Federico Sacchini, Aiden P. Foster, Jon H. Wetton and Mark A. Jobling
    Citation: BMC Genomics 2023 24:690
  29. The prevalence of Acinetobacter baumannii in nosocomial infections and its remarkable ability to develop antimicrobial resistance have been a critical issue in hospital settings. Here, we examined the genomic fea...

    Authors: Made Rai Dwitya Wiradiputra, Krit Thirapanmethee, Piyatip Khuntayaporn, Pagakrong Wanapaisan and Mullika Traidej Chomnawang
    Citation: BMC Genomics 2023 24:689
  30. Egg laying rate (LR) is associated with a clutch, which is defined as consecutive days of oviposition. The clutch trait can be used as a selection indicator to improve egg production in poultry breeding. Howev...

    Authors: Jie Wang, Zhansheng Liu, Dingguo Cao, Jie Liu, Fuwei Li, Heguo Han, Haixia Han, Qiuxia Lei, Wei Liu, Dapeng Li, Jianxia Wang and Yan Zhou
    Citation: BMC Genomics 2023 24:686
  31. Aspergillus fumigatus is a major fungal pathogen that causes severe problems due to its increasing resistance to many therapeutic agents. Fludioxonil is a compound that triggers a lethal activation of the fungal-...

    Authors: Sebastian Schruefer, Annica Pschibul, Sarah Sze Wah Wong, Tongta Sae-Ong, Thomas Wolf, Sascha Schäuble, Gianni Panagiotou, Axel A. Brakhage, Vishukumar Aimanianda, Olaf Kniemeyer and Frank Ebel
    Citation: BMC Genomics 2023 24:684
  32. Durum wheat is one of the most important crops, especially in the Mediterranean region. Insight into the genetic diversity of germplasm can improve the breeding program management in various traits. This study...

    Authors: Ehsan Rabieyan, Reza Darvishzadeh, Reza Mohammadi, Alvina Gul, Awais Rasheed, Fatemeh Keykha Akhar, Hossein Abdi and Hadi Alipour
    Citation: BMC Genomics 2023 24:682
  33. Microbial community played an essential role in ecosystem processes, be it mangrove wetland or other intertidal ecologies. Several enzymatic activities like hydrolases are effective ecological indicators of so...

    Authors: Bhramar Dutta, Urmi Halder, Annapurna Chitikineni, Rajeev K. Varshney and Rajib Bandopadhyay
    Citation: BMC Genomics 2023 24:681
  34. In dairy cows, diet is one factor that can affect their milk production and composition. However, the effect of feed restriction on milk miRNome has not yet been described. Indeed, milk is the body fluid with ...

    Authors: A. Leduc, S. Le Guillou, D. Laloë, L. Herve, J. Laubier, P. Poton, Y. Faulconnier, J. Pires, M. Gele, P. Martin, C. Leroux, M. Boutinaud and F. Le Provost
    Citation: BMC Genomics 2023 24:680
  35. High oncogene expression in cancer cells is a major cause of rapid tumor progression and drug resistance. Recent cancer genome research has shown that oncogenes as well as regulatory elements can be amplified ...

    Authors: Hansen Cheng, Wenhao Ma, Kun Wang, Han Chu, Guangchao Bao, Yu Liao, Yawen Yuan, Yixiong Gou, Liting Dong, Jian Yang and Haoyang Cai
    Citation: BMC Genomics 2023 24:678

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