Table 1 List of selected top-scoring RNA elements (see complete list at [25]).
From: Biocomputational prediction of non-coding RNAs in model cyanobacteria
CLID | Seq # | Species | (nt) | Z | Zrev | P | Prev | Comment/Location | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
6803 | 6301 | BP1 | NIES | ||||||||
80 | 3 | 1 | 1 | 0 | 1 | 80 | -2.8 | -4.2 | 1.0 | 1.0 | sll0088-x-ycf24 , Fig. 3A |
3 | 2 | 1 | 0 | 0 | 1 | 135 | -1.1 | -3.4 | 0.992 | 1.0 | slr0374-x-slr0376 |
129 | 2 | 0 | 1 | 1 | 0 | 84 | -3.2 | -2.2 | 1.0 | 0.667 | dnaN-x-cbbZp (6301) |
146 | 2 | 1 | 0 | 1 | 0 | 59 | -2.9 | -3.5 | 1.0 | 1.0 | fus-x-slr1464 |
216 | 2 | 1 | 0 | 0 | 1 | 211 | -3.8 | -2.1 | 1.0 | 1.0 | Rfam: Conserved RNA structure [29], 5'speB |
196 | 2 | 0 | 1 | 0 | 1 | 148 | -3.5 | -2.8 | 1.0 | 1.0 | trxA-x-hisA (6301) |
311 | 2 | 0 | 1 | 1 | 0 | 66 | -2.8 | -2.9 | 1.0 | 1.0 | tll0447-x-tll0448 (BP1) |
207 | 2 | 0 | 1 | 1 | 0 | 152 | -2.6 | -1.5 | 1.0 | 0.989 | rpl1-x-rpl10, rpl10 leader [31] |
96 | 4 | 2 | 0 | 0 | 2 | 42 | -3.9 | -3.2 | 1.0 | 1.0 | possible Rho-indp. term. |
56 | 2 | 1 | 0 | 0 | 1 | 52 | -2.4 | -2.4 | 1.0 | 1.0 | slr1739-x-slr1740 |
169 | 3 | 1 | 0 | 0 | 2 | 55 | -2.3 | -2.6 | 0.026 | 1.0 | possible Rho-indp. term. |
139 | 4 | 1 | 1 | 1 | 1 | 242 | -1.4 | -4.3 | 0.95 | 1.0 | Yfr1[13], 5' trxA in 3/4 |
338 | 2 | 0 | 1 | 0 | 1 | 69 | -2.6 | -3.7 | 1.0 | 0.994 | syc1122_c-x-cdsA (6301) |
37 | 3 | 1 | 0 | 0 | 2 | 82 | -4.7 | -4.5 | 1.0 | 1.0 | sll0834-x-sll0833 |
117 | 2 | 1 | 0 | 0 | 1 | 61 | -2.0 | -1.4 | 1.0 | 0.963 | groEL-2-x-sll0415 |
294 | 2 | 1 | 0 | 1 | 0 | 54 | -2.6 | -1.0 | 1.0 | 0.999 | SyR2, Fig. 4B |
86 | 2 | 0 | 1 | 1 | 0 | 42 | -2.0 | -2.0 | 1.0 | 0.999 | nrtA-x-nrtB (6301) |
149 | 4 | 2 | 0 | 1 | 1 | 147 | -2.9 | -0.9 | 1.0 | 0.013 | Rfam: thiamin riboswitch [30], 5' thiC |
394 | 2 | 1 | 0 | 0 | 1 | 110 | -2.8 | -1.9 | 1.0 | 0.996 | possible rps2 5'UTR |
192 | 2 | 1 | 1 | 0 | 0 | 31 | -2.8 | -3.9 | 0.996 | 1.0 | possible Rho-indp. term. |
107 | 2 | 1 | 0 | 0 | 1 | 224 | -1.7 | -2.1 | 0.999 | 1.0 | Rfam: possible riboswitch [29] |
302 | 2 | 1 | 0 | 0 | 1 | 96 | -4.2 | -5.2 | 1.0 | 0.995 | slr0708-x-sll0668 |
426 | 2 | 0 | 0 | 1 | 1 | 140 | -1.8 | -2.2 | 0.997 | 1.0 | tlr0843-x-plsX (BP1) |
375 | 2 | 1 | 0 | 0 | 1 | 54 | -0.3 | -0.6 | 0.999 | 0.004 | rpl11-x-rpl1 |
62 | 5 | 1 | 2 | 1 | 1 | 124 | -1.5 | -2.3 | 0.999 | 0.801 | groES mRNA leader (CIRCE element) in 4/5, Fig. 3B |
8 intermediate clusters! | |||||||||||
219 | 8 | 3 | 2 | 1 | 2 | 200 | -2.0 | -3.2 | 0.983 | 0.997 | Yfr2 family, Fig. 5 |
17 intermediate clusters! | |||||||||||
159 | 4 | 1 | 1 | 0 | 2 | 186 | -2.0 | -1.4 | 0.933 | 0.411 | SyR1, Fig. 4A |