Table 7 Major transcription factor families identified by conserved domain annotation of larval transcriptome
From: Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx
Sequences (n) | Domain ID | Conserved domain description |
|---|---|---|
1 | pfam01722 | BolA-like protein |
0 | pfam00313 | Cold-shock DNA-binding domain |
1 | pfam01381 | Helix-turn-helix |
2 | pfam02229 | Transcriptional Coactivator p15 |
0 | pfam02671 | Paired amphipathic helix repeat |
1 | pfam02864 | Signal transducer and activator of transcription |
1 | pfam01167 | Tub family |
4 | pfam00046 | Homeobox domain |
1 | pfam00447 | HSF-type DNA-binding |
2 | pfam00870 | P53 DNA-binding domain |
6 | pfam02257 | RFX DNA-binding domain |
2 | pfam01422 | NF-X1-type zinc finger protein |
3 | pfam02319 | E2F/DP winged-helix DNA-binding domain |
1 | pfam00319 | SRF-type transcription factor |
1 | pfam00250 | Fork head |
12 | pfam07716, pfam00170 | Basic region leucine zipper & bZIP |
9 | pfam00010 | Helix-loop-helix DNA-binding domain |
3 | pfam00249 | Myb-like DNA-binding domain |
12 | pfam00642 | Zinc finger, CCCH type |
5 | pfam00096 | Zinc finger, C2H2 type |