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Table 2 Regulated genes identified in the SSH libraries of thermal exposed Paralvinella pandorae irlandei with significant database matches (E-value above 0.005).

From: Molecular identification of differentially regulated genes in the hydrothermal-vent species Bathymodiolus thermophilus and Paralvinella pandorae in response to temperature

Homolog (protein); Blastx value Homolog Species Insert size (bp) Accession number SSH library
Respiratory chain
Cytochrome c oxidase subunit I; 1e-73 Littorina saxatilis 772 GH196478 reverse
Cytochrome oxidase subunit II; 1e-46 Lumbricus terrestris 715 GH196499 reverse
Cytochrome c oxidase subunit III; 2e-34 Albula glossodonta 457 GH196480 reverse
Cytochrome c oxidase polypeptide Va; 1e-20 Strongylocentrotus purpuratus 149 GH196490 reverse
Ubiquinol-cytochrome c reductase complex; 4e-23 Mus musculus 537 GH196502 reverse
Cytochrome b; 1e-23 Urechis caupo 258 GH196495 reverse
NADH dehydrogenase subunit 1; 4e-48 Urechis caupo 571 GH196493 reverse
NADH dehydrogenase subunit 6; 7e-05 Clymenella torquata 190 GH196501 reverse
Sulfur and oxygen transport
Hemoglobin A2c chain; 3e-31 Arenicola marina 569 GH196487 reverse
Hemoglobin B1 chain precursor; 4e-21 Arenicola marina 326 GH196479 reverse
Hemoglobin B2 chain; 1e-12 Arenicola marina 516 GH196491 reverse
Hemoglobin linker LY precursor; 5e-86 Riftia pachyptila 529 GH196505 reverse
Extracellular globin linker L1 precursor; 0.002 Alvinella pompejana 335 GH196504 reverse
Hemoglobin linker L2 precursor; 0.005 Alvinella pompejana 727 GH196483 forward
Intracellular hemoglobin; 5e-41 Alvinella pompejana 547 GH196492 forward
Metabolism
Trypsin; 6e-60 Litopenaeus vannamei 661 GH196494 reverse
S-adenosylhomocysteine hydrolase; 2e-66 Branchiostoma v 529 GH196476 forward
Cell communication, membrane receptors, immune system
Lipid binding protein 9; 5e-05 Caenorhabditis elegans 463 GH196481 forward
GTP-binding protein (rab7); 7e-89 Canis familiaris 641 GH196489 forward
Xylan endohydrolase isoenzyme, 6e-22 Arabidopsis thaliana 455 GH196472 reverse
Cyclophilin B; 4e-14 Gallus gallus 384 GH196477 reverse
Cytoskeleton production and maintenance
Chymotrysin; 4e-11 Lumbricus rubellus 230 GH196484 forward
Secreted nidogen domain protein; 4e-08 Strongylocentrotus purpuratus 325 GH196473 forward
Actin A1; 2e-35 Haliotis iris 541 GH196475 forward
Ribosomal proteins
Ribosomal protein L5; 3e-58 Rattus norvegicus 423 GH196497 reverse
Ribosomal protein L28; 6e-07 Haliotis asinina 262 GH196486 reverse
Ribosomal protein L24; 1e-38 Danio rerio 439 GH196482 forward
Ribosomal protein S3; 3e-30 Crassostrea gigas 205 GH196474 forward
Ribosomal protein S16; 2e-41 Gallus gallus 337 GH196500 forward
Ribosomal protein SA; 8e-43 Xenopus tropicalis 514 GH196496 forward
Ribosomal protein P1; 2e-11 Drosophila yakuba 444 GH196498 forward
Unknown function
CG14235-PA, isoform A; 1e-27 Tribolium castaneum 483 GH196488 forward
CBG19860; 2e-08 Caenorhabditis briggsae 266 GH196485 reverse
Unidentified sequences
50 sequences    GH196507 to GH196554
  1. Forward: genes over-expressed at 10°C versus 20°C; Reverse: genes over- expressed at 20°C versus 10°C.
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BMC Genomics

ISSN: 1471-2164

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