Expressional dynamics of minisatellite 33.15 tagged spermatozoal transcriptome in Bubalus bubalis

Srivastava, Jyoti; Premi, Sanjay; Kumar, Sudhir; Ali, Sher

doi:10.1186/1471-2164-10-303

BMC Genomics

Table 1 Detailed analysis of the spermatozoal mRNA transcripts tagged with consensus of 33.15 repeat loci in buffalo Bubalus bubalis and their homology or similarity with genes across the species#

From: Expressional dynamics of minisatellite 33.15 tagged spermatozoal transcriptome in Bubalus bubalis

Transcript ID	Accession no.	Size (In bp)	Clone ID	Description of Blast search	Accession no. of similar genes	Gene length (bp)	Chromo-Somal location	Nucleotide position of 33.6 tagged transcripts	Score	QC (%)	E-value	Similarity (%)
JS1	EU348479	276	pJSC39	1. Bos taurus chromosome 1 reference assembly (based on Btau 4.0); featuring in this part similar to uncharacterized protein C3orf44	NC007299.3	161106243	1	119054612–119054872	446	94	5e-112	95
				2. Homo sapiens cDNA FLJ30354 fis, clone BRACE2007682	AK054916	1698	---	590–699	77	39	4e-111	76
				3. Homo sapiens chromosome 19 clone CTD-2292J18	AC090427	109233	19	72209–72318	77	39	4e-111	76
				4. Homo sapiens tetratricopeptide repeat protein 12 (TTC12) gene, alternatively spliced	EF445041	64712	---	10050–10141	55	35	1e-04	74
JS2	EU348480	276	pJSC40	1. Bos taurus chromosome 1 reference assembly (based on Btau 4.0)	NC007324.3	53376418	23	277117728–277117989	412	97	3e-113	94
				2. Bovine steroid 21-hydroxylase gene (P-450-c21) gene	M11267.1	6601	23	6323–6583	414	97	9e-113	94
				3. Ovis aries cytochrome P-450 steroid 21 hydroxylase (P-450-c21) gene	EF382834	3454	20	3009–3272	411	97	1e-111	94
				4. Sheep cytochrome protein (P450C21C) mRNA	M92836	2020	---	1862–2018	263	57	3e-67	96
				5. Bovine microsomal cytochrome P-450(C21) mRNA	M12918	2157	23	2005–2157	255	55	7e-65	97
				6. Bos taurus cytochrome P450, subfamily XXI (CYP21A2), mRNA	NM_174639	2125	23	2005–2125	203	43	8e-51	97
JS3	EU348481	270	pJSC41	1. Homo sapiens BAC clone RP11-498O22 from 2	AC012506	197303	2	172668–172905	84.2	83	3e-113	69%
JS4	EU348482	267	pJSC42	No homology
JS5	EU348483	297	pJSC43	1. Bos taurus chromosome 5 reference assembly (based on Btau 4.0)	NC_007303	125847759	5	1233822–1234084	422	87	6e-105	92
JS6	EU348484	522	pJSC44	1. Bos taurus chromosome 9 reference assembly (based on Btau 4.0)	NC_007307	108145351	9	103122927–103123426	803	98	0.0	94
				2. Human DNA sequence from clone RP1-230L10 on chromosome 6 Contains part of a novel gene	AL137005	103679	6	54567–54689	77	23	8e-111	76
JS7	EU348485	517	pJSC45	1. Bos taurus chromosome 29, reference assembly (based on Btau_4.0),	NC_007330	51998940	29	30255363–30255634	448	76	2e-123	97
				2. Bos taurus chromosome 16, reference assembly (based on Btau_4.0),	NC_007314	77906053	16	45151977–45152179	326	40	9e-87	97
				3. Bos taurus Y Chr NOVECTOR CH240-223B23 (Children's Hospital Oakland Research Institute Bovine BAC Library (male	AC220322	194127	Y	25812–25932 29557–29670 117307–117421	200	23	5e-48	96
				4. Bos taurus molybdenum cofactor synthesis 3 (MOCS3), mRNA	XM_589014	2797	13	2194–2393	193	21	9e-46	95
				5. Bos taurus T cell receptor gamma cluster 2 (TCRG2) gene	AY644518	188109	---	145614–145734 77004-77124 24056-24175 130049–130169	200	23	3e-50	96
				6. Bos taurus clone p68.3 MHC class I antigen gene, 5' UTR and partial cds	AF396777	1169	---	548–668	195	23	2e-46	95
JS8	EU348486	537	pJSC46	1. Bos taurus chromosome 2, reference assembly (based on Btau_4.0)	NC_007300	140800416	2	34260844–34261131	484	98	2e-134	97
				2. Bos taurus chromosome 11, reference assembly	NC007309	110171769	11	--	201	99	3e-49	87
				2. Bos taurus chromosome X, reference assembly	NC_007331	88516663	X	51716993–51717467	235	99	1e-59	71
				3. Bos taurus ER degradation enhancer, mannosidase alpha-like 2 (EDEM2), mRNA	NM_001101085	3652	13	2472–2652	134	33	2e-30	77
				4. Bos taurus similar to mutant UDP-N-acetylglucosamine 2-epimerase/N-acetylman-nosamine kinase (GNE), mRNA	XM_001250216	6177	8	4822–5284	114	80	2e-24	67
				5. Rhinolophus ferrumequinum clone VMRC7-44G7	AC149031	192138	---	44739–45277	341	91	8e-49	77
				6.Felis catus clone RP86-177C24	AC087421	14'1881	---	4255–4688	199	86	1e-47	70
				7. Equus caballus subclone 355H03 3.3 MHC class I antigen gene	DQ083409	13464	ECA20	2473–3016	187	91	6e-44	68
JS9	EU348487	387	pJSC47	1. Bos taurus chromosome 10, reference assembly (based on Btau_4.0)	NC_007308	106383598	10	53535034–53535410	616	98	3e-174	97
				2. Homo sapiens chromosome 15 clone RP11-358M11 map 15q21.3	AC016525	256019	15q21.3	119191–119420	158	59	2e-35	75
JS10	EU348488	398	pJSC48	1. Bos taurus chromosome 2, reference assembly (based on Btau_4.0)	NC_007300	140800416	2	89906829–89907043 38557472–38557648	327	98	2e-87	94 95
				2. Bos taurus Y chr BAC CH240-96I24 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)	AC213711	186273	---	149863–150033 117725–117896 29045–29213	282	52	4e-75	96 94 91
				3. Bos taurus Fanconi anemia, complementation group M, mRNA	BC149286	1448	---	1228–1398	282	42	2e-75	96
				4. Bos taurus similar to zinc finger protein 568 (ZNF793), mRNA	XM_001254432	5407	18	4744–4914	264	42	5e-70	94
				5. Bos taurus similar to peroxisomal long-chain acyl-coA thioesterase (LOC516537), mRNA	XM_594692	2022	10	1603–1773	264	42	5e-70	94
JS11	EU348489	370	pJSC49	1. Bos taurus chromosome 12, reference assembly (based on Btau_4.0	NC_007310	85358539	12	82142726–82143101	513	98	2e-143	90
				2. Bos taurus BAC CH240-10G15 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)	AC149774	186916	---	129128–129350	240	60	2e-60	88
				3. Bos taurus cDNA clone IMAGE:8284348 & CR4-NOT transcription complex, subunit 8	BC119978	2730	---	545–742	235	53	5e-61	86
				4. O. aries KII-9 gene for hair type II keratin intermediate filament	X62509	7371	---	1823–2030	221	56	2e-54	83
				5. Bos taurus similar to Lysophosphatidic acid receptor Edg-7 (LPA receptor 3) (LPA-3) (EDG7), mRNA	XM_612024	2913	3	2138–2356	219	58	7e-54	82
				6. Bos taurus similar to Myotubularin-related protein 2, mRNA	BC148076	5057	---	4447–4665	215	58	9e-53	82
JS12	EU348490	375	pJSC50	1. Bos taurus chromosome 16, reference assembly (based on Btau_4.0)	NC_007314	77906053	16	1730212–1730571	563	96	2e-158	94

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