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Table 5 Evaluation of the experimentally validated echinoderm sequences using the two donor splice site models.

From: A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences from vertebrates, echinoderms and other groups

  

Observed

  

Purpuratus Model

Vertebrate model

  

Positive

Negative

Positive

Negative

Prediction

Positive

60

731

59

1037

 

Negative

2

5497

3

5191

 

Total

62

6228

62

6228

Assessments*

Sp

0.076

0.054

 

Sn

0.968

0.952

 

CC

0.253

0.204

 

SMC

0.883

0.835

 

ACP

0.731

0.710

 

AC

0.463

0.419

  1. *For a description of the assessments, see Methods. Higher values indicate greater accuracy. The range for all assessments is 0 to 1, with the exception of AC, which can range from -1 to 1.
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BMC Genomics

ISSN: 1471-2164

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