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Table 4 Comparison of replacements among bacteria with pepsin homologues

From: Pepsin homologues in bacteria

Family

Shewanella

amazonensis

Shewanella

loihica

Shewanella

sediminis

Colwellia

psychrerythraea

Sinorhizobium

medicae

Marinomonassp.

MWYL1

A1 (pepsin)

55.5

42.4

43.6

41.3

17.1

15.5

A8 (signal peptidase 2)

70.8

72.4

67.6

48.3

35.8

46.4

S16 (endpeptidase Clp)

89.0

90.9

89.9

78.1

61.6

67.2

  1. The protein sequences from Shewanella denitrificans were compared with orthologous protein sequences from other bacteria. Sequences were aligned with Muscle [30] and percentage identities calculated using Alistat http://hmmer.janelia.org/.