Table 2 Accuracy on simulated Sanger reads.
From: The effect of sequencing errors on metagenomic gene prediction
GeneMark | MetaGene | MGA | Orphelia | ESTScan | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Error rate1 | Sens.2 | Spec.3 | Sens.2 | Spec.3 | Sens.2 | Spec.3 | Sens.2 | Spec.3 | Sens.2 | Spec.3 |
0 to 0 | 91.9 ± 3.2 | 93.8 ± 4.9 | 94.4 ± 3.0 | 93.0 ± 2.9 | 94.7 ± 2.9 | 94.1 ± 2.9 | 89.7 ± 3.5 | 96.5 ± 1.7 | 78.9 ± 7.2 | 98.5 ± 1.2 |
1 to 2 × 10-5 | 91.9 ± 3.3 | 93.7 ± 5.2 | 94.8 ± 2.8 | 93.0 ± 3.0 | 94.8 ± 2.9 | 94.0 ± 3.1 | 90.1 ± 3.3 | 96.7 ± 1.6 | 79.2 ± 6.5 | 98.6 ± 1.1 |
1 to 2 × 10-4 | 91.8 ± 3.3 | 93.5 ± 5.2 | 94.5 ± 2.9 | 92.6 ± 3.2 | 94.5 ± 3.0 | 93.7 ± 3.1 | 89.6 ± 3.5 | 96.5 ± 1.7 | 79.0 ± 7.0 | 98.4 ± 1.3 |
1 to 2 × 10-3 | 90.5 ± 3.2 | 92.6 ± 4.8 | 93.3 ± 2.8 | 92.1 ± 3.0 | 93.3 ± 3.0 | 93.3 ± 2.8 | 87.2 ± 3.6 | 96.0 ± 1.7 | 78.0 ± 7.2 | 98.2 ± 1.2 |
1 to 2 × 10-2 | 77.7 ± 4.4 | 86.6 ± 6.9 | 79.8 ± 3.6 | 85.6 ± 3.9 | 81.2 ± 4.3 | 87.6 ± 3.1 | 65.7 ± 6.4 | 91.9 ± 1.8 | 66.2 ± 11.1 | 96.2 ± 1.8 |