From: Word-based characterization of promoters involved in human DNA repair pathways
(a) Bidirectional | |||||
---|---|---|---|---|---|
Word 1 | Word 2 | Location | Conservation | Hit | Score |
TCTGAGGA | TCGCGCCA | chr19:53365272–53366372 | None |  |  |
 |  | chr19:48776246–48777346 | None |  |  |
 |  | chr19:7600339–7601439 | Partial | TCGCGCCA | 385 |
ACTCCAGC | TCGCGCCA | chr4:57538069–57539168 | None |  |  |
 |  | chr19:48776246–48777346 | None |  |  |
 |  | chr19:7600339–7601439 | Partial | TCGCGCCA | 385 |
GCCCAGCC | TCCGCCGC | chr3:185561446–185562546 | Partial | TCCGCCGC | 310 |
 |  | chr14:19992129–19993229 | None |  |  |
 |  | chr11:832429–833529 | None |  |  |
GCCCAGCC | CGGAGCGC | chr3:185561446–185562546 | None |  |  |
 |  | chr14:19992129–19993229 | None |  |  |
TGCCCGCG | TCCCGGGA | chr19:53365272–53366372 | Partial | TCCCGGGA | 390 |
 |  | chr13:107668425–107669525 | None |  |  |
 |  | chr20:5055168–5056268 | None |  |  |
 |  | chr11:832429–833529 | None |  |  |
GGCAGGGA | GGGCCAGG | chr19:53365272–53366372 | Partial | GGGCCAGG | 390 |
 |  | chr22:40346240–40347340 | Complete | GGCAGGGA | 325 |
 |  |  |  | GGGCCAGG | 522 |
 |  | chr5:60276548–60277648 | None |  |  |
 |  | chr12:131773918–131775018 | None |  |  |
TCCCGGGA | TCGCGCCA | chr19:53365272–53366372 | Partial | TCCCGGGA | 390 |
 |  | chr4:57538069–57539168 | None |  |  |
 |  | chr19:7600339–7601439 | Partial | TCGCGCCA | 385 |
AGCCTGTC | TCCCGGGA | chr17:38530557–38531657 | None |  |  |
 |  | chr13:107668425–107669525 | Partial | AGCCTGTC | 244 |
 |  | chr4:57538069–57539168 | None |  |  |
GGAGGCTG | TCGCGCCA | chr4:57538069–57539168 | None |  |  |
 |  | chr19:48776246–48777346 | None |  |  |
 |  | chr19:7600339–7601439 | Partial | TCGCGCCA | 385 |
TCCGCCGC | GCCCCTCC | chr3:185561446–185562546 | Partial | TCCGCCGC | 310 |
 |  | chr14:19992129–19993229 | None |  |  |
 |  | chr1:11674165–11675265 | Partial | GCCCCTCC | 360 |
 |  | chr11:832429–833529 | None |  |  |
(b) Unidirectional | |||||
Word 1 | Word 2 | Location | Conservation | Hit | Score |
GTTCATTC | TCCGCCGG | chr7:73306574–73307674 | None |  |  |
 |  | chr12:52868924–52870024 | Partial | TCCGCCGG | 325 |
CTGTGTGC | TGCGCCGA | chr10:131154509–131155609 | None |  |  |
 |  | chr19:1046236–1047336 | None |  |  |
TGACGCGA | CTCCCGCT | chr12:116937892–116938992 | None |  |  |
 |  | chr17:30330654–30331754 | None |  |  |
AGCCGGCT | GGGGAGTA | chr6:30982955–30984055 | None |  |  |
 |  | chr16:13920523–13921623 | None |  |  |
ATTGCAGG | ATTCTCTC | chr5:86744492–86745592 | None |  |  |
 |  | chr17:30330654–30331754 | None |  |  |
GGGGAGTA | AGGAAACA | chr16:13920523–13921623 | None |  |  |
 |  | chr8:101231014–101232114 | None |  |  |
CTGGGAGC | GTTCATTC | chr7:73306574–73307674 | None |  |  |
 |  | chr12:52868924–52870024 | None |  |  |
CCTTCCGA | CTGGGAGC | chr5:68890824–68891924 | None |  |  |
 |  | chr7:73306574–73307674 | None |  |  |
TGGGCGGA | ACCCGCCT | chr6:30982955–30984055 | None |  |  |
 |  | chr9:99499360–99500460 | None |  |  |
TTTCTCCA | CGGAAACC | chr8:55097461–55098561 | None |  |  |
 |  | chr11:118471287–118472387 | None |  |  |