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Table 3 Summary and taxonomic source of BLAST matches to 454 ESTs.

From: Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

Taxonomic category

Contigs

Singletons

Combined Set

Conifer

1,170

(14.1%)

966

(9.0%)

1,536

(9.8%)

Other plant

4,984

(59.9%)

5,191

(48.4%)

8,309

(53.0%)

Insect

363

(4.4%)

1,176

(11.0%)

1,413

(9.0%)

Fungi

388

(4.7%)

1,392

(13.0%)

1,625

(10.4%)

Protozoa

104

(11.3%)

172

(1.6%)

240

(1.5%)

Other Eukaryote

1,208

(14.5%)

1,614

(15.0%)

2,260

(14.4%)

Bacteria

82

(1.0%)

199

(1.9%)

270

(1.7%)

Virus

16

(0.2%)

22

(0.2%)

30

(0.2%)

  1. Number and percentages of unique best BLASTx matches of 454 EST contigs, singletons, and the combined sequence set to Uniref50 grouped by taxonomic category.