Table 3 Scaffolding results for the Yersinia genomes.
From: Finishing genomes with limited resources: lessons from an ensemble of microbial genomes
Strain | AflII based | NheI based | Both Maps | Draft genome | |
|---|---|---|---|---|---|
| Â | Size in Mbp (% of genome) | Size in Mbp (% of genome) | Size in Mbp (% of genome) | Size in Mbp (% of genome) | # of gaps (>10 Kbp ) |
Y. kristensenii | 3.91 (83.9) | Â | Â | 4.36 (93.7) | 37 (8) |
Y. aldovae | 3.51 (82.9) | Â | Â | 3.64 (86.2) | 39 (14) |
Y. mollaretii | 3.73 (76.1) | 3.95 (80.6) | 4.15 (84.8) | 4.30 (87.8) | 56 (24) |
Y. fredriksenii | 4.34 (81.0) | 4.54 (84.8) | 4.63 (86.3) | 4.72 (88.1) | 33 (20) |
Y. bercovieri | 3.32 (72.8) | 3.50 (76.7) | 3.62 (79.2) | 3.87 (84.8) | 57 (25) |
Y. intermedia | 4.38 (86.9) | 4.14 (82.0) | 4.35 (86.3) | 4.62 (91.5) | 53 (15) |
Y. rohdei | 3.91 (85.3) | 3.81 (82.9) | 4.01 (87.3) | 4.15 (90.4) | 40 (16) |
Y. ruckerii | 1.93 (49.4) | 3.13 (80.1) | 3.20 (82.0) | 3.34 (85.5) | 39 (17) |