|  |  |  | Uniquely mapped reads |  |  |  | |
---|---|---|---|---|---|---|---|---|
Chromosome | Pseudomolecule of Nipponbare (bp)a | Koshihikari aligned length (bp)b | Coverage (%) | Total number | bp | Total number of mapped contigs | Sequencing depth (fold) | Total of SNPs |
1 | 45,064,769 | 36,886,997 | 81.9 | 21,887,208 | 719,138,056 | 63,889 | 16.6 | 10,980 |
2 | 36,823,111 | 31,152,504 | 84.6 | 19,972,645 | 656,243,813 | 53,822 | 18.3 | 4,113 |
3 | 37,257,345 | 32,175,988 | 86.4 | 19,309,856 | 634,463,329 | 51,236 | 17.5 | 2,773 |
4 | 35,863,200 | 27,331,878 | 76.2 | 15,718,358 | 516,454,041 | 69,662 | 14.6 | 9,891 |
5 | 30,039,014 | 24,458,877 | 81.4 | 14,277,427 | 469,092,491 | 51,892 | 15.7 | 1,032 |
6 | 32,124,789 | 25,763,900 | 80.2 | 14,992,102 | 492,566,411 | 53,317 | 15.8 | 1,165 |
7 | 30,357,780 | 24,230,102 | 79.8 | 13,935,933 | 457,866,127 | 55,090 | 15.4 | 7,561 |
8 | 28,530,027 | 22,970,652 | 80.5 | 13,106,335 | 430,601,662 | 53,667 | 15.2 | 6,426 |
9 | 23,843,360 | 19,060,074 | 79.9 | 11,008,304 | 361,678,832 | 41,137 | 15.7 | 178 |
10 | 23,661,561 | 18,592,212 | 78.6 | 10,572,960 | 347,371,203 | 43,569 | 15.3 | 3,617 |
11 | 30,828,668 | 22,439,806 | 72.8 | 12,582,930 | 413,402,408 | 58,282 | 14.5 | 12,216 |
12 | 27,757,321 | 21,114,982 | 76.1 | 11,932,390 | 392,027,726 | 58,990 | 14.1 | 7,099 |
Total or averagec | 382,150,945 | 306,177,972 | 80.1d | 179,296,448 | 5,890,906,099 | 654,543 | 15.7 | 67,051 |