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Table 2 Examples of "atypical" rearrangements involving δ.

From: Evolution of duplicated IgH loci in Atlantic salmon, Salmo salar

EST ID

Sequence repeat

Rearrangement

Join in δa

001-084

CTAG

V-(D?)-J-δ

641(e2)

002-029

CTAC

V-(D?)-J-δ

532(e2)

002-179

GANACAG

V(before RSS)b-δ

1073(e3)

003-005

CCA

VB1-12-D-J-VB1-13-δ

562(e2)

3.007

 

V-J-m-δ

1(e1)

3.169

 

V-(D)-J-δ

1(e1)

004-006

AGTG

V-(D)-δ

611(e2)

004-078

C

V(before RSS)-δ

236(e1)

006-049/55

 

δ only ?

337(e1)

006.078/82

 

δ only ?

623(e2)

006-106

CAG

V-(D?)-J-δ

begin(e1)

007-025

AGTGANGACACAG

V(before RSS)-δ

506(e2)

007-171

CATCAG

D-genomic-D-J-δ

647(e2)

9.03

 

V-?-δ

235(e1)

009-052

CCAC

V-(D?)-J-δ

294(e1)

11.169

CTG

V-(D)-J-δ

1089(e3)

12.059

GAC

V(before RSS)-δ

242(e1)

017-108

ACACA

V(before RSS)-δ

689(e2)

017-121

CAGAGG

V(before RSS)-δ

253(e1)

  1. a Joining position in exon1, 2, or 3.
  2. b Joining does not involve RSS but initiates earlier.