Skip to main content

Advertisement

Table 3 Developmentally regulated P. tetraureli a genes.

From: Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia

Transcript Accession Synonym Northern profile Biological Process Molecular Function Cluster Name Reference
GSPATT00006994001 NOWA1 EARLY PEAK programming DNA elimination RNA-binding Early induction Nowacki et al. 2005
GSPATT00016668001 NOWA2 EARLY PEAK programming DNA elimination RNA-binding Early induction Nowacki et al. 2005
GSPATT00008494001 DCL2 EARLY PEAK programming DNA elimination ribonuclease III activity Early peak Lepere et al. 2008
GSPATT00027456001 DCL3 EARLY PEAK programming DNA elimination ribonuclease III activity Early peak Lepere et al. 2008
GSPATT00021895001 PTIWI01 EARLY PEAK programming DNA elimination RNA-binding Early peak Bouhouche et al. (d)
GSPATT00001395001 PTIWI03 EARLY PEAK ? RNA-binding Early peak Bouhouche et al. (d)
GSPATT00020796001 PTIWI09 EARLY PEAK programming DNA elimination RNA-binding Early peak Bouhouche et al. (d)
GSPATT00000299001 PTMB.220 EARLY PEAK MAC development RNA helicase Early peak Nowak et al. 2010
GSPATT00009108001 SPO11 EARLY PEAK meiosis endonuclease Early peak Baudry et al. 2009
GSPATT00007001001 SUMOI EARLY PEAK (c) DNA elimination SUMOylation Early peak Matsuda et al. 2006
GSPATT00016666001 SUMOII EARLY PEAK (c) DNA elimination SUMOylation Early peak Matsuda et al. 2006
GSPATT00013187001 SUMOIII EARLY PEAK (c) DNA elimination SUMOylation Early peak Matsuda et al. 2006
GSPATT00000555001 PTMB.08 EARLY PEAK ? ? not found (a) Nowak et al. 2010
GSPATT00000151001 PTMB.344 EARLY PEAK DNA mismatch repair DNA-binding not found (b) Nowak et al. 2010
GSPATT00016627001 PGM LATE PEAK DNA elimination endonuclease Intermediate induction Baudry et al. 2009
GSPATT00024933001 DIE5a LATE PEAK (c) DNA elimination ? Intermediate induction Matsuda et al. 2010
GSPATT00026720001 DIE5b LATE PEAK (c) DNA elimination ? Intermediate induction Matsuda et al. 2010
GSPATT00021288001 PTIWI08 LATE PEAK ? RNA-binding Intermediate induction Bouhouche et al. (d)
GSPATT00000552001 PTMB.10 GRADUAL INDUCTION ? ? Intermediate induction Nowak et al. (e)
GSPATT00000388001 PTMB.143 GRADUAL INDUCTION ? ? Intermediate induction Nowak et al. (e)
GSPATT00000358001 PTMB.169 LATE PEAK ? ? Intermediate induction Nowak et al. (e)
GSPATT00000301001 PTMB.219 LATE PEAK ? ? Intermediate induction Nowak et al. (e)
GSPATT00000022001 PTMB.443 LATE PEAK ? ? Intermediate induction Nowak et al. (e)
GSPATT00009468001 PTIWI10 LATE PEAK ? RNA-binding Late induction Bouhouche et al. (d)
GSPATT00019939001 PTIWI11 LATE PEAK ? RNA-binding Late induction Bouhouche et al. (d)
  1. Developmentally regulated genes with published Northern blots are given along with the cluster in which the gene is found in the autogamy experiment, if any. The biological process and the likely molecular function are given when possible. a) This gene figures among the set of 5558 differentially expressed genes, is up-regulated early in autogamy (p-value = 0.003), but was not present in the set of 2467 most differentially expressed genes used for hierarchical clustering. b) This MSH2 homolog was not found to be differentially expressed. Examination of the data indicates that the gene is probably up-regulated at meiosis in some, but not all, autogamy experiments. c) The SUMO and DIE5 Northern blots are of conjugation, not autogamy. d) Bouhouche K, Goût J, Kapusta A, Bétermier M, Meyer E: Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodeling, submitted; e) Nowak JK, Gromadka R, Juszczuk M, Jerka-Dziadosz M, Maliszewska K, Mucchielli M, Goût JF, Arnaiz O, Agier N, Tang T, Aggerbeck L, Cohen J, Delacroix H, Sperling L, Herbert CJ, Zagulski M, Bétermier M: A chromosome-wide study of genes essential for meiosis and nuclear reorganization in Paramecium, submitted. Published data was taken from references [6669].