Table 4 Inconsistencies between information from NCBI protein database and SHV mutation table
From: SHV Lactamase Engineering Database: a reconciliation tool for SHV β-lactamases in public databases
GI | Name and mutation profile according to | Inconsistency | |
|---|---|---|---|
NCBI protein database | SHV mutation table* | ||
262044380 | SHV-5 [G238S E240K] | SHV-like [P252L] | different mutation profile |
41584432 | SHV-5 [G238S E240K] | SHV-like [T235N G238S E240K] | |
51105097 | SHV-5 [G238S E240K] | SHV-like [R6L G238S E240K] | |
40950644 | SHV-5 [G238S E240K] | SHV-12 [L35Q G238S E240K] | |
41584438 | SHV-5 [G238S E240K] | SHV-like [L35Q T235N G238S E240K] | |
41584428 | SHV-5 [G238S E240K] | SHV-like [L35Q T235N G238S E240K S271N] | |
41584434 | SHV-5 [G238S E240K] | fragment (C-1) of SHV-12 [L35Q G238S E240K] | a fragment with different mutation profile |
41584430 | SHV-5 [G238S E240K] | fragment (C-1) of SHV-like [L35Q T235N G238S E240K] | |
40950646 | SHV-5 [G238S E240K] | fragment (C-2) of SHV-like [L35Q D233E G238S E240K] | |
157838542 | SHV-7 [I8F R43S G238S E240K] | fragment (N-19 C-2) of SHV-like [R43S G238S E240K] | |
77702548 | SHV-11 [L35Q] | SHV-1 (no mutation) | different mutation profile |
90403947 | SHV-12 [L35Q G238S E240K] | fragment (C-4) of SHV-like [L35Q G238S E240K E288F] | a fragment with different mutation profile |
90403949 | SHV-12 [L35Q G238S E240K] | fragment (N-2 C-7) of SHV-like [Y7W I8V R9I L10F C11P L35Q G238S E240K] | |
90403945 | SHV-12 [L35Q G238S E240K] | fragment (N-9 C-1) of SHV-like [L35Q G238S E240K E288N H289L W290G Q291T] | |
90403951 | SHV-12 [L35Q G238S E240K] | fragment (N-10 C+1) of SHV-like [L35Q G238S E240K A284R A285P L286Y I287K E288N H289L W290E Q291P R292K] | |
15718691 | SHV-16 [-162.1D -162.2R -162.3W -162.4E -162.5T] | SHV like [H96T Y97H -162.1D -162.2R -162.3W -162.4E -162.5T] | different mutation profile |
255045865 | SHV-28 [Y7F] | fragment (N-6 C-20) of SHV-1 | a fragment with different mutation profile |
30230495 | SHV-48 [V119I] | SHV-like [L35Q R191H G238S E240K] | different mutation profile |
33943602 | SHV-56 [L35Q K234R] | SHV-like [S14Y L35Q G238S E240K] | |
83596180 | SHV-71[H112Y A146V] | SHV-like [L35Q G238S E240K N254D] | |
84380855 | SHV-86 [L35Q G238S E240R] | SHV-like [Y7F L35Q G238S E240R] | |
159138975 | SHV-102 [G238A] | fragment (N-24 C-5) of SHV-like [L35Q E168A G251S] | a fragment with different mutation profile |
159138973 | SHV-102 [G238A] | fragment (N-23 C-5) of SHV-like [L35Q E168A G251S] | |
154269503 | SHV-103 [L250R] | SHV-like [K256R] | different mutation profile |
161367444 | SHV-104 [M5L R202S] | SHV-like [R202S] | |
257359515 | SHV-121 [I8A A22V L35Q M129V] | SHV-like [T18A A22V L35Q M129V] | |
256862196 | SHV-123 [L35Q G238S E240K P252G N254I] | fragment (C-15) of SHV-like [L35Q G238S E240K P252G N255I] | a fragment with different mutation profile |