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Table 1 Distribution of the major SSR types identified from the seed BACs in B. rap a

From: Construction of an integrated genetic linkage map for the A genome of Brassica napus using SSR markers derived from sequenced BACs in B. rapa

Motifs Number (%) Range (bp) Average length (bp)
Dinucleotide 8398 (36.21) 12-214 19.13
AT 4718 (20.34) 12-210 19.74
AG 2997 (12.92) 12-214 19.08
AC 680 (2.94) 12-74 14.94
CG 2 (0.01) 12-16 14.00
Tri-nucleotide 8722 (37.61) 12-102 13.79
AAG 2612 (11.26) 12-93 13.91
AAT 1547 (6.67) 12-102 14.00
ATC 1246 (5.43) 12-51 13.85
AAC 929 (4.00) 12-42 13.77
AGG 889 (3.83) 12-39 13.75
ACC 608 (2.62) 12-27 13.69
AGC 339 (1.46) 12-27 13.33
ACG 194 (0.83) 12-30 13.13
ACT 185 (0.80) 12-24 13.23
CCG 173 (0.71) 12-24 13.20
Tetranucleotide 3616 (15.59) 12-52 13.26
AAAT 1323 (5.70) 12-36 13.18
AAAG 483 (2.08) 12-40 13.57
AAAC 455 (2.37) 12-28 13.44
Others 1355(5.44) 12-52 13.16
Pentanucleotide 2457 (10.59) 15-45 14.56
AAAAT 685 (2.95) 15-30 14.86
AAAAC 239 (1.03) 15-30 15.84
AAAAG 171 (0.73) 15-20 15.53
Others 1362 (5.88) 15-45 14.07
Total 23192 (100.00) 12-214 14.16