From: Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs
ncRNA Name | Clone Number | Length | Probe ID | Northern data | Conservation score | Consistance | ||||
---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  | Chicken | Mouse | Human | Chicken | Mouse | Human |  |
Group 1 40 ncRNAs detected by 18 ncRNA probes | ||||||||||
7SK | 9 | 332 | MT721 | yes | yes | yes | 0.98 | 1 | 1 | Y |
RNaseP_nuc | 1 | 340 | MP733 | yes | yes | yes | 0.12 | 0.36 | 1 | Y |
SNORA61 | 1 | 131 | MP2422 | yes | yes | yes | 0.42 | 0.36 | 1 | Y |
SNORA66 | 4 | 131 | MP405 | yes | yes | yes | 0.69 | 0.83 | 1 | Y |
SNORA81 | 26 | 179 | MP284 | yes | yes | yes | 0.42 | 0.99 | 1 | Y |
SNORD94 | 5 | 135 | MP141 | yes | yes | yes | 0.64 | 1 | 1 | Y |
7SLa | 1 | 299 | MP477 | yes | yes | yes | 0.97 | 1 | 1 | Y |
7SLb | 2 | 300 | MP477 | yes | yes | yes | 0.97 | 1 | 1 | Y |
U1-1 | 14 | 164 | MT369 | yes | yes | yes | 1 | 1 | 1 | Y |
U1-2 | 17 | 166 | MT369 | yes | yes | yes | 1 | 1 | 1 | Y |
U1-3 | 23 | 166 | MT369 | yes | yes | yes | 1 | 1 | 1 | Y |
U12 | 12 | 150 | MT305 | yes | yes | yes | 0.87 | 1 | 1 | Y |
U2-1 | 5 | 184 | MP76 | no | yes | yes | 0.99 | 1 | 1 | Y |
U2-2 | 21 | 188 | MP76 | no | yes | yes | 0.99 | 1 | 1 | Y |
U3a | 12 | 148 | MT42 | yes | yes | yes | 0.70 | 0.81 | 1 | Y |
U3b | 9 | 217 | MT42 | yes | yes | yes | 0.72 | 0.8 | 1 | Y |
U3c | 7 | 218 | MT42 | yes | yes | yes | 0.71 | 0.82 | 1 | Y |
U3d | 10 | 218 | MT42 | yes | yes | yes | 0.70 | 0.80 | 1 | Y |
U3e | 8 | 219 | MT42 | yes | yes | yes | 0.73 | 0.82 | 1 | Y |
U3f | 6 | 221 | MT42 | yes | yes | yes | 0.70 | 0.81 | 1 | Y |
U3g | 6 | 216 | MT42 | yes | yes | yes | 0.71 | 0.83 | 1 | Y |
U3h | 9 | 216 | MT42 | yes | yes | yes | 0.72 | 0.81 | 1 | Y |
U3i | 7 | 216 | MT42 | yes | yes | yes | 0.70 | 0.80 | 1 | Y |
U3j | 2 | 216 | MT42 | yes | yes | yes | 0.73 | 0.82 | 1 | Y |
U3k | 20 | 217 | MT42 | yes | yes | yes | 0.71 | 0.81 | 1 | Y |
U3l | 5 | 217 | MT42 | yes | yes | yes | 0.73 | 0.80 | 1 | Y |
U3m | 7 | 217 | MT42 | yes | yes | yes | 0.72 | 0.84 | 1 | Y |
U3n | 6 | 217 | MT42 | yes | yes | yes | 0.70 | 0.83 | 1 | Y |
U4 | 10 | 146 | MT365 | yes | yes | yes | 0.99 | 0.99 | 1 | Y |
U5-1 | 1 | 97 | MP235 | yes | yes | yes | 0.70 | 0.99 | 0.88 | Y |
U5-2 | 6 | 118 | MP235 | yes | yes | yes | 0.75 | 0.99 | 0.88 | Y |
U5-3 | 9 | 121 | MP235 | yes | yes | yes | 0.74 | 0.99 | 0.88 | Y |
U5-4 | 8 | 121 | MP235 | yes | yes | yes | 0.73 | 0.99 | 0.88 | Y |
U5-5 | 6 | 124 | MP235 | yes | yes | yes | 0.78 | 0.99 | 0.88 | Y |
U6-1 | 35 | 89 | MT44 | yes | yes | yes | 1 | 1 | 1 | Y |
U6-2 | 48 | 104 | MT44 | yes | yes | yes | 1 | 1 | 1 | Y |
U6atac | 43 | 127 | MT65 | yes | yes | yes | 0.96 | 0.96 | 1 | Y |
unclassified 2 | 1 | 51 | MT4702 | yes | yes | yes | 0.94 | 0.94 | 0.94 | Y |
Y5 | 30 | 102 | MP281 | yes | yes | yes | 0.62 | 1 | 1 | Y |
Y6 | 81 | 112 | MP91 | yes | yes | yes | 1 | 1 | 1 | Y |
Group 2 51 ncRNAs detected by 49 ncRNA probes | ||||||||||
RNase_MRP | 1 | 146 | MP690 | no | yes | yes | 0.15 | 0.39 | 1 | Y |
SCARNA11 | 2 | 144 | MP66 | no | yes | yes | 0.16 | 0.85 | 1 | Y |
SCARNA15 | 2 | 127 | MP77 | no | yes | yes | 0.22 | 0.99 | 1 | Y |
SCARNA25 | 3 | 142 | MP407 | no | yes | yes | 0.17 | 1 | 0.98 | Y |
SCARNA4 | 3 | 128 | MP400 | no | yes | yes | 0.23 | 0.98 | 1 | Y |
SNORA11 | 1 | 115 | MP4400 | no | yes | yes | 0.20 | 0.51 | 1 | Y |
SNORA13 | 1 | 135 | MP243 | no | yes | yes | 0.19 | 0.99 | 1 | Y |
SNORA14 | 2 | 132 | MP227 | no | yes | yes | 0.20 | 0.99 | 1 | Y |
SNORA15 | 2 | 138 | MP236 | no | yes | yes | 0.20 | 0.46 | 0.98 | Y |
SNORA17 | 2 | 134 | MP695 | no | yes | yes | 0.16 | 0.87 | 1 | Y |
SNORA18 | 5 | 133 | MP17 | no | yes | yes | 0.23 | 0.98 | 1 | Y |
SNORA2 | 1 | 137 | MP4598 | no | yes | yes | 0.17 | 0.99 | 1 | Y |
SNORA23 | 2 | 189 | MP268 | no | yes | yes | 0.23 | 0.94 | 1 | Y |
SNORA24 | 2 | 130 | MP252 | no | yes | yes | 0.41 | 1 | 1 | Y |
SNORA28 | 3 | 129 | MP306 | no | yes | yes | 0.31 | 0.92 | 1 | Y |
SNORA36a | 3 | 132 | MP207 | no | yes | yes | 0.42 | 0.98 | 1 | Y |
SNORA36b | 2 | 132 | MP207 | no | yes | yes | 0.45 | 0.52 | 1 | Y |
SNORA4 | 6 | 140 | MP374 | no | yes | yes | 0.17 | 0.44 | 1 | Y |
SNORA41 | 1 | 131 | MP4579 | no | yes | yes | 0.20 | 0.56 | 0.98 | Y |
SNORA42 | 1 | 139 | MP4011 | no | yes | yes | 0.22 | 0.86 | 1 | Y |
SNORA49 | 2 | 138 | MP427 | no | yes | yes | 0.20 | 0.88 | 1 | Y |
SNORA5 | 3 | 135 | MP4812 | no | yes | yes | 0.45 | 0.84 | 1 | Y |
SNORA53 | 2 | 248 | MP750 | no | yes | yes | 0.29 | 1 | 1 | Y |
SNORA54 | 2 | 124 | MP319 | no | yes | yes | 0.24 | 1 | 1 | Y |
SNORA58 | 4 | 137 | MP4121 | no | yes | yes | 0.21 | 0.52 | 1 | Y |
SNORA62 | 8 | 150 | MP86 | no | yes | yes | 0.17 | 1 | 0.99 | Y |
SNORA63 | 13 | 135 | MP32 | no | yes | yes | 0.19 | 0.99 | 1 | Y |
SNORA7 | 1 | 140 | MP4777 | no | yes | yes | 0.20 | 0.96 | 1 | Y |
SNORA70 | 1 | 135 | MP4769 | no | yes | yes | 0.23 | 0.70 | 1 | Y |
SNORA71 | 3 | 138 | MP241 | no | yes | yes | 0.19 | 0.83 | 1 | Y |
SNORA72 | 5 | 132 | MP356 | no | yes | yes | 0.19 | 0.96 | 1 | Y |
SNORA74a | 2 | 134 | MP2697 | no | yes | yes | 0.12 | 1 | 1 | Y |
SNORA74b | 2 | 203 | MP4370 | no | yes | yes | 0.12 | 1 | 1 | Y |
SNORD13 | 23 | 104 | MT370 | no | yes | yes | 0.21 | 0.74 | 1 | Y |
SNORD15 | 2 | 142 | MP4 | no | yes | yes | 0.23 | 1 | 1 | Y |
SNORD17a | 2 | 250 | MP20 | no | yes | yes | 0.12 | 1 | 0.99 | Y |
SNORD17b | 6 | 257 | MP20 | no | yes | yes | 0.12 | 1 | 0.99 | Y |
SNORD22 | 1 | 126 | MP4712 | no | yes | yes | 0.21 | 1 | 1 | Y |
SNORD46 | 3 | 101 | MP329 | no | yes | yes | 0.26 | 0.96 | 0.96 | Y |
SNORD67 | 1 | 104 | MP4243 | no | yes | yes | 0.45 | 0.98 | 0.98 | Y |
snoU6-53 | 3 | 110 | MP277 | no | yes | yes | 0.24 | 0.98 | 1 | Y |
U11 | 4 | 136 | MP1393 | no | yes | yes | 0.29 | 1 | 1 | Y |
U4atac | 35 | 131 | MT4 | no | yes | yes | 0.19 | 0.98 | 1 | Y |
unclassified 6 | 1 | 137 | MP2665 | no | yes | yes | 0.18 | 0.26 | 0.99 | Y |
unclassified 7 | 2 | 143 | MP232 | no | yes | yes | 0.17 | 0.99 | 1 | Y |
Vault RNA | 2 | 89 | MP331 | no | yes | yes | 0.21 | 0.25 | 0.53 | Y |
SNORD116 | 3 | 90 | MT4173 | no | no | yes | 0.28 | 0.77 | 1 | Y |
SNORA31 | 7 | 128 | MP312 | no | yes | yes | 0.66 | 1 | 1 | N |
SNORA73 | 1 | 119 | MP4480 | no | yes | yes | 0.97 | 0.97 | 0.96 | N |
SNORA8 | 1 | 140 | MP4084 | no | yes | yes | 0.69 | 0.99 | 1 | N |
SNORD16 | 1 | 94 | MT2039 | no | yes | yes | 0.85 | 1 | 1 | N |
Group 3 16 ncRNAs detected by 14 probes | ||||||||||
SNORA25 | 2 | 133 | MP3076 | no | no | yes | 0.18 | 0.56 | 0.99 | Y |
SNORA64 | 1 | 132 | MP4716 | no | no | yes | 0.18 | 0.21 | 1 | Y |
SNORA68 | 1 | 133 | MP2580 | no | no | yes | 0.18 | 0.32 | 1 | Y |
SNORD24 | 1 | 71 | MT325 | no | no | yes | 0.32 | 0.32 | 1 | Y |
U8 | 8 | 137 | MT180 | no | no | yes | 0.17 | 0.46 | 1 | Y |
unclassified 8 | 1 | 153 | MP472 | no | no | yes | 0.16 | 0.18 | 1 | Y |
Y1 | 1 | 77 | MP727 | no | no | yes | 0.27 | 0.51 | 0.92 | Y |
Y2 | 4 | 90 | MP727 | no | no | yes | 0.26 | 0.49 | 0.92 | Y |
Y3 | 34 | 90 | MP727 | no | no | yes | 0.25 | 0.53 | 0.92 | Y |
Y4 | 25 | 96 | MT274 | no | no | yes | 0.27 | 0.27 | 1 | Y |
SNORA19 | 4 | 132 | MP4158 | no | no | yes | 0.40 | 0.99 | 1 | N |
SNORA27 | 3 | 128 | MP464 | no | no | yes | 0.22 | 0.98 | 1 | N |
SNORA40 | 1 | 130 | MP4587 | no | no | yes | 0.22 | 0.77 | 1 | N |
SNORA43 | 1 | 134 | MP2188 | no | no | yes | 0.16 | 0.76 | 1 | N |
SNORA76 | 1 | 135 | MP1373 | no | no | yes | 0.18 | 0.93 | 0.99 | N |
snosnR60_Z15 | 1 | 68 | MT2333 | no | no | yes | 1 | 1 | 1 | N |
Group 4 8 ncRNAs detected by 8 probes | ||||||||||
SNORA20 | 2 | 133 | MP4330 | no | no | no | 0.18 | 0.18 | 1 | N |
SNORD26 | 1 | 139 | MP2208 | no | no | no | 0.20 | 0.97 | 0.98 | N |
SNORD27 | 2 | 69 | MP299 | no | no | no | 0.36 | 0.72 | 1 | N |
SNORD87 | 1 | 77 | MP4391 | no | no | no | 0.31 | 0.48 | 1 | N |
unclassified 1 | 7 | 51 | MT3898 | no | no | no | 0.63 | 1 | 1 | N |
unclassified 3 | 2 | 52 | MT3338 | no | no | no | ** | ** | ** | ** |
unclassified 4 | 1 | 67 | MP2207 | no | no | no | 0.32 | 0.35 | 0.65 | N |
unclassified 5 | 2 | 75 | MP2233 | no | no | no | 0.33 | 0.55 | 0.99 | N |
Group 5 Only one ncRNA belongs to this group | ||||||||||
SNORD45 | 1 | 77 | MP2242 | no | yes | no | 0.34 | 1 | 1 | N |
Group 6 Only one ncRNA belongs to this group | Â | Â | Â | Â | Â | Â | Â | |||
SNORA50 | 3 | 136 | MP2895 | yes | no | yes | 0.98 | 1 | 1 | N |