BMC Genomics

Table 2 Microarray experimental design:

From: Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley

Array slide	Replicate	Sample pairs
		Name	Treatment	Label	Name	Treatment	Label
1	I	L94	Mock	C3	L94	Ph-infected	C5
1	I	Vada	Mock	C3	Vada	Ph-infected	C5
1	II	L94	Mock	C3	L94	Ph-infected	C5
1	II	Vada	Mock	C3	Vada	Ph-infected	C5
1	III	L94	Mock	C5	L94	Ph-infected	C3
1	III	Vada	Mock	C5	Vada	Ph-infected	C3
1	IV	L94	Mock	C5	L94	Ph-infected	C3
1	IV	Vada	Mock	C5	Vada	Ph-infected	C3
2	I	L94	Ph-infected	C3	Vada	Ph-infected	C5
2	II	L94	Ph-infected	C5	Vada	Ph-infected	C3
2	III	L94	Ph-infected	C3	Vada	Ph-infected	C5
2	IV	L94	Ph-infected	C5	Vada	Ph-infected	C3
3	I	L94	Ph-infected	C3	L94-Rphq 2+ 3	Ph-infected	C5
3	I	Vada	Ph-infected	C3	Vada- Rphq 2+ 3	Ph-infected	C5
3	II	L94	Ph-infected	C5	L94- Rphq 2+ 3	Ph-infected	C3
3	II	Vada	Ph-infected	C5	Vada- Rphq 2+ 3	Ph-infected	C3
3	III	L94	Ph-infected	C3	L94- Rphq 2+ 3	Ph-infected	C5
3	III	Vada	Ph-infected	C3	Vada- Rphq 2+ 3	Ph-infected	C5
3	IV	L94	Ph-infected	C5	L94- Rphq 2+ 3	Ph-infected	C3
3	IV	Vada	Ph-infected	C5	Vada- Rphq 2+ 3	Ph-infected	C3

Array slide 1: Ph-infected vs. mock-inoculated controls for Ph-responsive genes; Array slide 2: Ph-infected L94 vs. Ph-infected Vada for differentially expressed genes; Array slide 3: Ph-infected parents vs. Ph-infected QTL-NILs for QTL specific and differentially expressed genes.

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ISSN: 1471-2164

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