Table 1 Length distribution of assembled contigs, scaffolds and unigenes
Nucleotides length (bp) | contigs | Scaffolds | unigenes |
|---|---|---|---|
75-100 | 57424 | 1303 | 0 |
101-200 | 95153 | 46037 | 280 |
201-300 | 23619 | 20788 | 20632 |
301-400 | 11590 | 9987 | 9949 |
401-500 | 6527 | 6311 | 6302 |
501-600 | 3979 | 4040 | 4028 |
601-700 | 2737 | 2844 | 2844 |
701-800 | 1866 | 2010 | 2014 |
801-900 | 1307 | 1612 | 1621 |
901-1000 | 901 | 1236 | 1241 |
1001-1200 | 1166 | 1864 | 1862 |
1201-1400 | 714 | 1325 | 1322 |
1401-1600 | 434 | 1027 | 1029 |
1601-1800 | 268 | 824 | 824 |
1801-2000 | 174 | 597 | 593 |
2001-2200 | 98 | 455 | 458 |
2201-2400 | 61 | 334 | 333 |
2401-2600 | 35 | 258 | 261 |
2601-2800 | 21 | 197 | 199 |
2801-3000 | 18 | 159 | 157 |
>3000 | 35 | 567 | 567 |
Total | 208,127 | 103,775 | 56,516 |
Minimum length (bp) | 75 | 100 | 200 |
Maximum length (bp) | 6891 | 10679 | 10679 |
N50 (bp) | 252 | 585 | 765 |
Average length (bp) | 202 | 377 | 581 |
Total Nucleotides length (bp) | 42,074,974 | 39,129,156 | 32,852,951 |