Table 3 Novel chicken miRNAs predicted by miRDeep
miRNA ID | chr | strand | start | end | Layer* | Broiler* |
|---|---|---|---|---|---|---|
gga-miR-N1 | chr3 | + | 4348337 | 4348358 | 135 | 62 |
gga-miR-N2 | chrUn_random | - | 13277374 | 13277395 | 2 | 52 |
gga-miR-N3 | chrUn_random | + | 30704197 | 30704218 | 29 | 21 |
gga-miR-N4 | chr17 | + | 2477065 | 2477087 | 18 | 14 |
gga-miR-N5 | chr27 | + | 1117232 | 1117255 | 22 | 6 |
gga-miR-N6 | chr2 | + | 103042957 | 103042979 | 26 | 0 |
gga-miR-N7 | chr18 | - | 5042929 | 5042952 | 20 | 5 |
gga-miR-N8 | chr4 | - | 3214463 | 3214484 | 23 | 0 |
gga-miR-N9 | chr6 | + | 31550357 | 31550378 | 18 | 4 |
gga-miR-N10 | chr1 | - | 180215042 | 180215065 | 14 | 3 |
gga-miR-N11 | chr4 | - | 51257851 | 51257872 | 7 | 9 |
gga-miR-N12 | chrZ | - | 28247215 | 28247238 | 12 | 4 |
gga-miR-N13 | chr3 | + | 85117942 | 85117965 | 13 | 1 |
gga-miR-N14 | chr4 | + | 563352 | 563373 | 11 | 3 |
gga-miR-N15 | chr26 | - | 2669812 | 2669834 | 11 | 2 |
gga-miR-N16 | chr3 | + | 59307968 | 59307990 | 5 | 7 |
gga-miR-N17 | chr18 | - | 4116255 | 4116279 | 6 | 5 |
gga-miR-N18 | chr3 | + | 724977 | 724994 | 0 | 7 |
gga-miR-N19 | chr4 | + | 2151238 | 2151261 | 4 | 3 |
gga-miR-N20 | chr7 | - | 37893831 | 37893851 | 6 | 1 |
gga-miR-N21 | chr19 | + | 4862173 | 4862194 | 1 | 4 |
gga-miR-N22 | chr20 | - | 10896392 | 10896413 | 5 | 0 |
gga-miR-N23 | chr15 | - | 11255901 | 11255922 | 4 | 0 |
gga-miR-N24 | chr24 | + | 2618818 | 2618840 | 3 | 1 |
gga-miR-N25 | chr27 | - | 4426392 | 4426414 | 4 | 0 |
gga-miR-N26 | chr4 | + | 16625715 | 16625736 | 3 | 1 |
gga-miR-N27 | chrUn_random | - | 40250702 | 40250728 | 3 | 1 |
gga-miR-N28 | chr1 | + | 52701699 | 52701723 | 2 | 1 |
gga-miR-N29 | chr10 | - | 16415151 | 16415173 | 1 | 1 |
gga-miR-N30 | chr2 | + | 133303756 | 133303776 | 1 | 1 |
gga-miR-N31 | chr27 | - | 3957524 | 3957545 | 2 | 0 |
gga-miR-N32 | chr3 | - | 49536173 | 49536194 | 1 | 1 |
gga-miR-N33 | chr7 | + | 12850964 | 12850988 | 0 | 2 |