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Table 3 SNVs selected in the different collections using different ngs_backbone filters.

From: ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequence

  SA IL HL CO PO
SNVs 16575 9640 23360 2855 514
UCR 11312 6763 16150 1925 294
I30 16502 9619 23271 2847 507
CL30 16249 8996 22523 2722 510
EU 4360 3434 6934 860 291
CS60 6155 4765 9730 1190 98
CEF 645 480 996 129 25
  1. SA: Sanger collection: SNVs detected with Sanger sequences.
  2. IL: Illumina collection: SNVs detected with Illumina sequences.
  3. HL: Higher likelihood collection: SNVs detected with Illumina and Sanger sequences.
  4. CO: Common collection: SNVs detected in Illumina and Sanger collections.
  5. PO: Polymorphic collection: SNVs with an estimated frequency of most common allele under 0.67.
  6. EU: Easily usable SNVs set: SNVs selected using UCR I30 and CL30 filters.