Table 4 Genetic variation detected by different methods (size in base pairs).
Method | Type | Number | Min. | Median | Max | Length |
|---|---|---|---|---|---|---|
Mosaik+GigaBayes+CLC+BWA+SMALT+SAMtools | SNP | 2,859,650 | Â | Â | Â | 2,859,650 |
SAMtools+Dindel | indel | 197,895 | 1 | 1 | 12 | 349,248 |
BreakDancer (mate-pair) | indel, inv, transl | 8,596 | 42 | 122 | 127,536 | 6,286,578 |
Pindel (split-read) | indel, inv | 1,416 | 13 | 22 | 855,018 | 1,147,264 |
CNV-seq+Nimblegen6.3M+Illumina770 k | CNV | 46 | 3,170 | 25,812 | 595,739 | 3,889,717 |
Total | Â | 3,067,603 | 1 | Â | 855,018 | 14,532,457 |