A gene-based SNP resource and linkage map for the copepod Tigriopus californicus

BMC Genomics

Table 2 Number of pairs of colocalizing loci in both Tigriopus californicus and assembled reference genomes.

	linkage groups	n align	n pairs	threshold	p-value range
Apis mellifera	16	124	46	43	0.007-0.002
Tribolium castaneum	10	134	55	61	0.649-0.535
Drosophila melanogaster	5	144	91	94	0.563-0.369
Daphnia pulex	>3000	72	2	4	0.607-0.321

The number of linkage groups of the draft reference genomes of each species are shown, with the number of identified homologues between T. californicus and each of the reference genomes, and the number of homologue pairs which colocalize to a linkage group in both T. californicus and the reference. The maximum (threshold) number of colocalized pairs we would expect to see by chance, and the significance of the observed number of colocalized pairs were determined by permutation.

ISSN: 1471-2164