From: De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum
 | Primary assembly (MIRA) | Secondary assembly (MIRA+CAP3) |
---|---|---|
Number of reads assembled into contigs | 574,134 | 640,285 |
Number of reads discarded during assembly | 31,723 | 0 |
Number of 454 reads retained as singletons | 75,865 | 9,714 |
Number of primary contigs (MIRA) | 91,100 | 24,775 |
Number of secondary contigs (CAP3) | 0 | 21,767 |
Total number of unique sequences (unigenes) | 166,965 | 56,256 |
Mean unigene length (bp) | 423.11 | 547.23 |
Largest unigene length (bp) | 1,746 | 3,229 |
Total assembly length (Mbp) | 70.65 | 30.79 |
Mean read depth coverage | 3.03 | 6.96 |