From: A gene selection method for GeneChip array data with small sample sizes
q-value | 0.01 | 0.025 | 0.05 | 0.075 | 0.1 | |
---|---|---|---|---|---|---|
p- cutoff (from "qvalue") | MBIS | 0.00685 | 0.0240 | 0.0617 | 0.108 | 0.162 |
 | T | 0.00144 | 0.0155 | 0.0613 | 0.123 | 0.192 |
 | SAM | 0 | 0 | 0.00741 | 0.0560 | 0.0969 |
# DE genes | MBIS | 3075 | 4306 | 5550 | 6458 | 7276 |
 | T | 561 | 2402 | 4748 | 6345 | 7435 |
 | SAM | 0 | 0 | 3695 | 4734 | 5335 |
# common DE genes | MBIS, T | 459 | 1954 | 3861 | 5261 | 6330 |
 | MBIS, SAM | 0 | 0 | 3694 | 4734 | 5335 |
 | T, SAM | 0 | 0 | 3327 | 4504 | 5228 |
Est. FDR | MBIS | 0.0177 | 0.0443 | 0.0884 | 0.133 | 0.177 |
 | T | 0.0186 | 0.0468 | 0.0937 | 0.141 | 0.187 |